Literature DB >> 7479085

CGG repeats associated with DNA instability and chromosome fragility form structures that block DNA synthesis in vitro.

K Usdin1, K J Woodford.   

Abstract

A large increase in the length of a CGG tandem array is associated with a number of triplet expansion diseases, including fragile X syndrome, the most common cause of heritable mental retardation in humans. Expansion results in the appearance of a fragile site on the X chromosome in the region of the CGG array. We show here that CGG repeats readily form a series of barriers to DNA synthesis in vitro. There barriers form only when the (CGG)n strand is used as the template, are K(+)-dependent, template concentration-independent, and involve hydrogen bonding between guanines. Chemical modification experiments suggest these blocks to DNA synthesis result from the formation of a series of intrastrand tetraplexes. A number of lines of evidence suggest that both triplet expansion and chromosome fragility are the result of replication defects. Our data are discussed in the light of such evidence.

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Year:  1995        PMID: 7479085      PMCID: PMC307363          DOI: 10.1093/nar/23.20.4202

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  23 in total

1.  A rodent-human hybrid containing Xq24-qter translocated to a hamster chromosome expresses the Xq27 folate-sensitive fragile site.

Authors:  R L Nussbaum; S D Airhart; D H Ledbetter
Journal:  Am J Med Genet       Date:  1986 Jan-Feb

2.  Chromosome breakage and recombination at fragile sites.

Authors:  T W Glover; C K Stein
Journal:  Am J Hum Genet       Date:  1988-09       Impact factor: 11.025

3.  Sequence analysis of the fragile X trinucleotide repeat: implications for the origin of the fragile X mutation.

Authors:  K Snow; D J Tester; K E Kruckeberg; D J Schaid; S N Thibodeau
Journal:  Hum Mol Genet       Date:  1994-09       Impact factor: 6.150

4.  Insert size and flanking haplotype in fragile X and normal populations: possible multiple origins for the fragile X mutation.

Authors:  J N Macpherson; H Bullman; S A Youings; P A Jacobs
Journal:  Hum Mol Genet       Date:  1994-03       Impact factor: 6.150

5.  Fragile X expression is decreased by 5-azacytidine and S-adenosylhomocysteine.

Authors:  J C Mixon; V G Dev
Journal:  Am J Hum Genet       Date:  1983-11       Impact factor: 11.025

6.  Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A,C,G,T).

Authors:  F Aboul-ela; D Koh; I Tinoco; F H Martin
Journal:  Nucleic Acids Res       Date:  1985-07-11       Impact factor: 16.971

7.  Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA.

Authors:  Y Kohwi; T Kohwi-Shigematsu
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

8.  Fragile X chromosome: clinical and cytogenetic studies on cases from seven families.

Authors:  A McDermott; R Walters; R T Howell; A Gardner
Journal:  J Med Genet       Date:  1983-06       Impact factor: 6.318

9.  The yeast KEM1 gene encodes a nuclease specific for G4 tetraplex DNA: implication of in vivo functions for this novel DNA structure.

Authors:  Z Liu; W Gilbert
Journal:  Cell       Date:  1994-07-01       Impact factor: 41.582

10.  A novel K(+)-dependent DNA synthesis arrest site in a commonly occurring sequence motif in eukaryotes.

Authors:  K J Woodford; R M Howell; K Usdin
Journal:  J Biol Chem       Date:  1994-10-28       Impact factor: 5.157

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  105 in total

1.  Replication delay along FRA7H, a common fragile site on human chromosome 7, leads to chromosomal instability.

Authors:  A Hellman; A Rahat; S W Scherer; A Darvasi; L C Tsui; B Kerem
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

2.  Molecular basis for expression of common and rare fragile sites.

Authors:  Eitan Zlotorynski; Ayelet Rahat; Jennifer Skaug; Neta Ben-Porat; Efrat Ozeri; Ruth Hershberg; Ayala Levi; Stephen W Scherer; Hanah Margalit; Batsheva Kerem
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

3.  The fragile X syndrome repeats form RNA hairpins that do not activate the interferon-inducible protein kinase, PKR, but are cut by Dicer.

Authors:  Vaishali Handa; Tapas Saha; Karen Usdin
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

4.  The guanine-rich fragile X chromosome repeats are reluctant to form tetraplexes.

Authors:  Petr Fojtík; Iva Kejnovská; Michaela Vorlícková
Journal:  Nucleic Acids Res       Date:  2004-01-12       Impact factor: 16.971

5.  G4 DNA unwinding by BLM and Sgs1p: substrate specificity and substrate-specific inhibition.

Authors:  Michael D Huber; Damian C Lee; Nancy Maizels
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

6.  Double-strand break repair plays a role in repeat instability in a fragile X mouse model.

Authors:  Inbal Gazy; Bruce Hayward; Svetlana Potapova; Xiaonan Zhao; Karen Usdin
Journal:  DNA Repair (Amst)       Date:  2018-12-21

7.  The DNA replication program is altered at the FMR1 locus in fragile X embryonic stem cells.

Authors:  Jeannine Gerhardt; Mark J Tomishima; Nikica Zaninovic; Dilek Colak; Zi Yan; Qiansheng Zhan; Zev Rosenwaks; Samie R Jaffrey; Carl L Schildkraut
Journal:  Mol Cell       Date:  2013-11-27       Impact factor: 17.970

Review 8.  Recent advances in assays for the fragile X-related disorders.

Authors:  Bruce E Hayward; Daman Kumari; Karen Usdin
Journal:  Hum Genet       Date:  2017-09-02       Impact factor: 4.132

9.  Chemotherapeutic deletion of CTG repeats in lymphoblast cells from DM1 patients.

Authors:  Vera I Hashem; Malgorzata J Pytlos; Elzbieta A Klysik; Kuniko Tsuji; Mehrdad Khajavi; Merhdad Khajav; Tetsuo Ashizawa; Richard R Sinden
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

10.  Optimization of PCR conditions for amplification of GC-Rich EGFR promoter sequence.

Authors:  Jasmina Obradovic; Vladimir Jurisic; Natasa Tosic; Jasminka Mrdjanovic; Branislav Perin; Sonja Pavlovic; Natasa Djordjevic
Journal:  J Clin Lab Anal       Date:  2013-11       Impact factor: 2.352

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