Literature DB >> 7353041

On the nature of molecular conformations inferred from high-resolution NMR.

O Jardetzky.   

Abstract

The basic, usually unstated, premises underlying the derivation of "average" conformations of flexible molecules from high-resolution NMR parameters (shifts, coupling constants and relaxation times) are critically examined. It is shown that in cases where the individual conformers contributing to the average are not known the "average" derived from spectroscopic data represents a virtual structure devoid of physical meaning.

Mesh:

Year:  1980        PMID: 7353041     DOI: 10.1016/0005-2795(80)90174-9

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  29 in total

1.  Conformational ensembles: the role of neuropeptide structures in receptor binding.

Authors:  A S Edison; E Espinoza; C Zachariah
Journal:  J Neurosci       Date:  1999-08-01       Impact factor: 6.167

2.  Conformational flexibility in calcitonin: the dynamic properties of human and salmon calcitonin in solution.

Authors:  P Amodeo; A Motta; G Strazzullo; M A Castiglione Morelli
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

3.  Assessing the effect of conformational averaging on the measured values of observables.

Authors:  R Bürgi; J Pitera; W F van Gunsteren
Journal:  J Biomol NMR       Date:  2001-04       Impact factor: 2.835

4.  Reconciling MA'AT and molecular dynamics models of linkage conformation in oligosaccharides.

Authors:  Reagan J Meredith; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  Phys Chem Chem Phys       Date:  2020-07-08       Impact factor: 3.676

5.  A comparison of methods for calculating NMR cross-relaxation rates (NOESY and ROESY intensities) in small peptides.

Authors:  K Anton Feenstra; Christine Peter; Ruud M Scheek; Wilfred F van Gunsteren; Alan E Mark
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

6.  An improved structural characterisation of reduced French bean plastocyanin based on NMR data and local-elevation molecular dynamics simulation.

Authors:  Denise Steiner; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2012-06-16       Impact factor: 1.733

7.  Secondary H/D isotope effect on hydrogen-bonded hydroxyl groups as a tool for recognizing distance constraints in conformational analysis of oligosaccharides.

Authors:  J Dabrowski; H Grosskurth; C Baust; N E Nifant'ev
Journal:  J Biomol NMR       Date:  1998-07       Impact factor: 2.835

8.  Methods of NMR structure refinement: molecular dynamics simulations improve the agreement with measured NMR data of a C-terminal peptide of GCN4-p1.

Authors:  Jozica Dolenc; John H Missimer; Michel O Steinmetz; Wilfred F van Gunsteren
Journal:  J Biomol NMR       Date:  2010-06-04       Impact factor: 2.835

9.  Self-consistent 3J coupling analysis for the joint calibration of Karplus coefficients and evaluation of torsion angles.

Authors:  J M Schmidt; M Blümel; F Löhr; H Rüterjans
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

10.  On using oscillating time-dependent restraints in MD simulation.

Authors:  Bettina Keller; Markus Christen; Chris Oostenbrink; Wilfred F van Gunsteren
Journal:  J Biomol NMR       Date:  2006-12-16       Impact factor: 2.835

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