Literature DB >> 20700690

Secondary H/D isotope effect on hydrogen-bonded hydroxyl groups as a tool for recognizing distance constraints in conformational analysis of oligosaccharides.

J Dabrowski1, H Grosskurth, C Baust, N E Nifant'ev.   

Abstract

An 'isotopomer-selected NOE' (ISNOE) method for the unequivocal identification of mutually hydrogen-bond-linked hydroxyl groups is described. It relies on the fact that the OH group's signal patterns obtained for a partially deuterated sample originate from both isotopomers of the 'partner' hydroxyl, whereas a NOE for this group can originate from cross-relaxation with the protio isotopomer of this hydroxyl only. Hence, the isotopically shifted component of this group's signal does not appear in a ROE difference spectrum obtained with selective excitation of the 'partner' hydroxyl. This method is also applicable in those cases when only one of two mutually hydrogen-bonded groups exhibits resolvable isotope shifts. Furthermore, it is shown that isotope shifts may occur even for pairs of OH groups that are not mutually hydrogen-bonded, if these participate in hydrogen bonds with other hydroxyls and thereby affect conformational equilibria. The ISNOE experiment enables one to distinguish between these two sources of isotope shifts. Since the O[Symbol: see text][Symbol: see text][Symbol: see text]O distance for hydrogen-bonded hydroxyls in sugars is known to lie between 2.7 and 3.0 A , the hydrogen bonds established by ISNOE can be used in conformational analysis as reliable, motionally non-averaged distance constraints for the conformations containing these bonds.

Entities:  

Year:  1998        PMID: 20700690     DOI: 10.1023/A:1008237308320

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  5 in total

1.  Virtual and solution conformations of oligosaccharides.

Authors:  D A Cumming; J P Carver
Journal:  Biochemistry       Date:  1987-10-20       Impact factor: 3.162

2.  On the nature of molecular conformations inferred from high-resolution NMR.

Authors:  O Jardetzky
Journal:  Biochim Biophys Acta       Date:  1980-02-27

Review 3.  The conformations of the Lewis blood group determinants, sucrose and kanamycin A.

Authors:  R U Lemieux; K Bock
Journal:  Jpn J Antibiot       Date:  1979-12

4.  Three-dimensional structure of the oligosaccharide terminus of globotriaosylceramide and isoglobotriaosylceramide in solution. A rotating-frame NOE study using hydroxyl groups as long-range sensors in conformational analysis by 1H-NMR spectroscopy.

Authors:  L Poppe; J Dabrowski; C W von der Lieth; K Koike; T Ogawa
Journal:  Eur J Biochem       Date:  1990-04-30

5.  Synthesis of 2,3-di-O-glycosyl derivatives of methyl alpha- and beta-D-glucopyranoside.

Authors:  N E Nifant'ev; A S Shashkov; N K Kochetkov
Journal:  Carbohydr Res       Date:  1993-12-28       Impact factor: 2.104

  5 in total
  1 in total

1.  Suitability of binary mixtures of water with aprotic solvents to turn hydroxyl protons of carbohydrate ligands into conformational sensors in NOE and transferred NOE experiments.

Authors:  Hans-Christian Siebert; Sabine André; Johannes F G Vliegenthart; Hans-Joachim Gabius; Michael J Minch
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

  1 in total

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