Literature DB >> 458870

Are evolutionary rates really variable?

J H Gillespie, C H Langley.   

Abstract

Langley and Fitch (1974, 1976) have shown that the pattern of nucleotide substitutions in proteins is inconsistent with a Poisson process with constant rate. From this they conclude that the rate is temporally heterogeneous. It is pointed out in this note that a process which is temporally homogeneous but not a Poisson process is compatible with the data if the coefficient of variation of the time between substitutions is around 1.63. Furthermore, theoretical analysis of samples from neutral phylogenies shows that these samples should not appear to be samples from a Poisson process, but should deviate from a Poisson process in the same direction, though perhaps not to the same extent, as do the data.

Mesh:

Year:  1979        PMID: 458870     DOI: 10.1007/bf01732751

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  4 in total

1.  On the number of segregating sites in genetical models without recombination.

Authors:  G A Watterson
Journal:  Theor Popul Biol       Date:  1975-04       Impact factor: 1.570

2.  An examination of the constancy of the rate of molecular evolution.

Authors:  C H Langley; W M Fitch
Journal:  J Mol Evol       Date:  1974       Impact factor: 2.395

3.  Evolutionary rate at the molecular level.

Authors:  M Kimura
Journal:  Nature       Date:  1968-02-17       Impact factor: 49.962

4.  Sampling theory for alleles in a random environment.

Authors:  J H Gillespie
Journal:  Nature       Date:  1977-03-31       Impact factor: 49.962

  4 in total
  37 in total

1.  Understanding the overdispersed molecular clock.

Authors:  D J Cutler
Journal:  Genetics       Date:  2000-03       Impact factor: 4.562

2.  Pervasive multinucleotide mutational events in eukaryotes.

Authors:  Daniel R Schrider; Jonathan N Hourmozdi; Matthew W Hahn
Journal:  Curr Biol       Date:  2011-06-21       Impact factor: 10.834

3.  Isolation with migration models for more than two populations.

Authors:  Jody Hey
Journal:  Mol Biol Evol       Date:  2009-12-02       Impact factor: 16.240

4.  A theoretical method for evaluating the relative importance of positive selection and neutral drift from observed base changes.

Authors:  J Otsuka; S Fukuchi; N Kikuchi
Journal:  J Mol Evol       Date:  1997-08       Impact factor: 2.395

5.  A test of neutral molecular evolution based on nucleotide data.

Authors:  R R Hudson; M Kreitman; M Aguadé
Journal:  Genetics       Date:  1987-05       Impact factor: 4.562

Review 6.  Challenges in Species Tree Estimation Under the Multispecies Coalescent Model.

Authors:  Bo Xu; Ziheng Yang
Journal:  Genetics       Date:  2016-12       Impact factor: 4.562

7.  Effects of linkage on rates of molecular evolution.

Authors:  C W Birky; J B Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

8.  On the overdispersed molecular clock.

Authors:  N Takahata
Journal:  Genetics       Date:  1987-05       Impact factor: 4.562

9.  Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in Passerina buntings.

Authors:  Matt D Carling; Robb T Brumfield
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

10.  Pervasive cryptic epistasis in molecular evolution.

Authors:  Mark Lunzer; G Brian Golding; Antony M Dean
Journal:  PLoS Genet       Date:  2010-10-21       Impact factor: 5.917

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