Literature DB >> 7248459

Deuterium nuclear magnetic resonance of specifically labeled native collagen. Investigation of protein molecular dynamics using the quadrupolar echo technique.

L W Jelinski, C E Sullivan, L S Batchelder, D A Torchia.   

Abstract

Collagen was labeled with [3,3,3-d3]alanine and with [d10]leucine via tissue culture. 2H nuclear magnetic resonance (NMR) spectra were obtained of collagen in solution and as fibrils using the quadrupolar echo technique. The 2H NMR data for [3,3,3-d3]alanine-labeled collagen fibrils were analyzed in terms of a model for motion in which the molecule is considered to jump between two sites, separated azimuthally by an angle 2 delta, in a time which is rapid compared with the residence time in both sites. The data suggest that the molecule undergoes reorientation over an angle, 2 delta, of approximately 30 degrees in the fibrils, and that the average angle between the alanine C alpha--C beta bond axis and the long axis of the helix is approximately 75 degrees. Reorientation is possibly segmental. The T2 for [3,3,3-d3]alanine-labeled collagen fibrils was estimated to be 105 mus. The 2H NMR data for the methyl groups of [d10]leucine-labeled collagen were analyzed qualitatively. These data established that for collagen in solution and as fibrils, rotation occurs about the leucine side-chain bonds, in addition to threefold methyl rotation and reorientation of the peptide backbone. The T2 for the methyl groups of leucine-labeled collagen is estimated to be approximately 130 mus. Taken together, these data provide strong evidence that both polypeptide backbone reorientation and amino acid side-chain motion occur in collagen molecules in the fibrils. Stabilizing interactions that determine fibril structure must therefore depend upon at least two sets of contacts in any given local region.

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Year:  1980        PMID: 7248459      PMCID: PMC1327347          DOI: 10.1016/S0006-3495(80)84987-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

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Authors:  B B Doyle; D W Hukins; D J Hulmes; A Miller; J Woodhead-Galloway
Journal:  J Mol Biol       Date:  1975-01-05       Impact factor: 5.469

2.  13C Magnetic resonance evidence for anisotropic molecular motion in collagen fibrils.

Authors:  D A Torchia; D L VanderHart
Journal:  J Mol Biol       Date:  1976-06-14       Impact factor: 5.469

3.  Dynamic light scattering from collagen solutions. II. Photon correlation study of the depolarized light.

Authors:  J C Thomas; G C Fletcher
Journal:  Biopolymers       Date:  1979-06       Impact factor: 2.505

4.  Collagen cross-linking. Purification and substrate specificity of lysyl oxidase.

Authors:  R C Siegel; J C Fu
Journal:  J Biol Chem       Date:  1976-09-25       Impact factor: 5.157

5.  Chain conformation in the collagen molecule.

Authors:  R D Fraser; T P MacRae; E Suzuki
Journal:  J Mol Biol       Date:  1979-04-15       Impact factor: 5.469

Review 6.  The chemistry and structure of collagen.

Authors:  W Traub; K A Piez
Journal:  Adv Protein Chem       Date:  1971

7.  Proton magnetic resonance of proteins fully deuterated except for 1H-leucine side chains.

Authors:  H L Crespi; R M Rosenberg; J J Katz
Journal:  Science       Date:  1968-08-23       Impact factor: 47.728

8.  Deuterium isotope effects in enzymatic transamination.

Authors:  S M Fang; H J Rhodes; M I Blake
Journal:  Biochim Biophys Acta       Date:  1970-08-15

9.  Deuterium nuclear magnetic resonance studies of the interaction between dimyristoylphosphatidylcholine and gramicidin A'.

Authors:  D Rice; E Oldfield
Journal:  Biochemistry       Date:  1979-07-24       Impact factor: 3.162

10.  Collagen fibril formation. Evidence for a multistep process.

Authors:  R A Gelman; B R Williams; K A Piez
Journal:  J Biol Chem       Date:  1979-01-10       Impact factor: 5.157

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  4 in total

1.  Solid state deuterium NMR study of LKα14 peptide aggregation in biosilica.

Authors:  Helen E Ferreira; Gary P Drobny
Journal:  Biointerphases       Date:  2017-06-27       Impact factor: 2.456

2.  Characterization of leucine side-chain reorientation in collagen-fibrils by solid-state 2H NMR.

Authors:  L S Batchelder; C E Sullivan; L W Jelinski; D A Torchia
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

3.  A solid-state deuterium NMR and sum-frequency generation study of the side-chain dynamics of peptides adsorbed onto surfaces.

Authors:  Nicholas F Breen; Tobias Weidner; Kun Li; David G Castner; Gary P Drobny
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

4.  Proline provides site-specific flexibility for in vivo collagen.

Authors:  Wing Ying Chow; Chris J Forman; Dominique Bihan; Anna M Puszkarska; Rakesh Rajan; David G Reid; David A Slatter; Lucy J Colwell; David J Wales; Richard W Farndale; Melinda J Duer
Journal:  Sci Rep       Date:  2018-09-14       Impact factor: 4.379

  4 in total

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