Literature DB >> 7190024

Kinetic mechanism of glutamate dehydrogenase.

J E Rife, W W Cleland.   

Abstract

Initial velocity patterns and dead-end inhibition studies with oxalylglycine suggest that the addition of NADPH, keto acid, and ammonia occurs with obligatory order. For monocarboxylic keto acids, the keto acid-ammonia initial velocity pattern is equilibrium ordered because koff is much greater than Vmax. alpha-Ketoglutarate gives substrate inhibition that is uncompetitive vs. either NADPH or ammonia in the absence of NADP+, but with high NAD+ is noncompetitive vs. NADPH and uncompetitive vs. ammonia. The inhibition is partial on both slopes and intercepts, showing that ketoglutarate slows down but does not prevent NADP+ release, and that it forms a weak but kinetically competent E-ketoglutarate complex. The apparent ordered combination of NADPH and keto acid thus results from strong synergism in binding. Deuterium isotope effects, together with the substrate inhibition patterns for ketoglutarate, show that addition of amino acid and NADP+ is random, with NADP+ being released from the ternary complex more rapidly than either glutamate or norvaline. With norvaline, hydride transfer is a major rate-limiting step, while with glutamate a step preceding hydride transfer is slower than hydride transfer. The equilibrium 18O isotope effect is 1.031 +/- 0.006 (18O enriching in ketoglutarate relative to water), but no kinetic 18O isotope effect was seen.

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Year:  1980        PMID: 7190024     DOI: 10.1021/bi00552a007

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Characterization of nicotinamidases: steady state kinetic parameters, classwide inhibition by nicotinaldehydes, and catalytic mechanism.

Authors:  Jarrod B French; Yana Cen; Tracy L Vrablik; Ping Xu; Eleanor Allen; Wendy Hanna-Rose; Anthony A Sauve
Journal:  Biochemistry       Date:  2010-11-15       Impact factor: 3.162

2.  A steady-state random-order mechanism for the oxidative deamination of norvaline by glutamate dehydrogenase.

Authors:  C LiMuti; J E Bell
Journal:  Biochem J       Date:  1983-04-01       Impact factor: 3.857

3.  A reductive aminase from Aspergillus oryzae.

Authors:  Godwin A Aleku; Scott P France; Henry Man; Juan Mangas-Sanchez; Sarah L Montgomery; Mahima Sharma; Friedemann Leipold; Shahed Hussain; Gideon Grogan; Nicholas J Turner
Journal:  Nat Chem       Date:  2017-05-29       Impact factor: 24.427

4.  Ligand-induced changes in the conformational stability and flexibility of glutamate dehydrogenase and their role in catalysis and regulation.

Authors:  Sarah A Wacker; Michael J Bradley; Jimmy Marion; Ellis Bell
Journal:  Protein Sci       Date:  2010-10       Impact factor: 6.725

5.  Ox glutamate dehydrogenase. Comparison of the kinetic properties of native and proteolysed preparations.

Authors:  A D McCarthy; K F Tipton
Journal:  Biochem J       Date:  1985-08-15       Impact factor: 3.857

6.  The kinetic mechanism of ox liver glutamate dehydrogenase in the presence of the allosteric effector ADP. The oxidative deamination of L-glutamate.

Authors:  D P Hornby; M J Aitchison; P C Engel
Journal:  Biochem J       Date:  1984-10-01       Impact factor: 3.857

7.  Application of the second rule of transient-state kinetic isotope effects to an enzymatic mechanism.

Authors:  Harvey F Fisher; Steven J Maniscalco; Jon Tally; Kayann Tabanor
Journal:  Biochemistry       Date:  2009-12-29       Impact factor: 3.162

8.  Negative co-operativity in glutamate dehydrogenase. Involvement of the 2-position in glutamate in the induction of conformational changes.

Authors:  E T Bell; C LiMuti; C L Renz; J E Bell
Journal:  Biochem J       Date:  1985-01-01       Impact factor: 3.857

9.  Mapping the Intramolecular Communications among Different Glutamate Dehydrogenase States Using Molecular Dynamics.

Authors:  Shaherin Basith; Balachandran Manavalan; Tae Hwan Shin; Gwang Lee
Journal:  Biomolecules       Date:  2021-05-27

10.  Using Cryo-EM to Map Small Ligands on Dynamic Metabolic Enzymes: Studies with Glutamate Dehydrogenase.

Authors:  Mario J Borgnia; Soojay Banerjee; Alan Merk; Doreen Matthies; Alberto Bartesaghi; Prashant Rao; Jason Pierson; Lesley A Earl; Veronica Falconieri; Sriram Subramaniam; Jacqueline L S Milne
Journal:  Mol Pharmacol       Date:  2016-04-01       Impact factor: 4.436

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