Literature DB >> 7171710

Information-theoretic significance of Gibbs energy supply to editing mechanisms.

A Kremen.   

Abstract

If a branched multistep editing mechanism is implemented by an enzyme with a single site for the specific substrates, there is no reason to believe that the number of testing steps is fixed and cannot be controlled by some external factors. The paper considers the mechanisms of single- or multistep editing done in response to various factors, particularly to the value of displacement from the reaction equilibrium. To avoid a complicated analysis of a fully specified case, which would be likely to obscure the general significant features, the operating modes of those mechanisms are estimated using the method of minimizing associated information gains. It turns out that sufficiently far from equilibrium the variable mechanisms can essentially operate just as well as the fixed multistep mechanisms.

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Year:  1982        PMID: 7171710      PMCID: PMC1328987          DOI: 10.1016/S0006-3495(82)84469-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

1.  On the fidelity of transcription by Escherichia coli ribonucleic acid polymerase.

Authors:  C F Springgate; L A Loeb
Journal:  J Mol Biol       Date:  1975-10-05       Impact factor: 5.469

2.  Kinetic amplification of enzyme discrimination.

Authors:  J Ninio
Journal:  Biochimie       Date:  1975       Impact factor: 4.079

3.  Energy cost of proofreading to increase fidelity of transfer ribonucleic acid aminoacylation.

Authors:  M A Savageau; R R Freter
Journal:  Biochemistry       Date:  1979-08-07       Impact factor: 3.162

4.  Mistranslation in E. coli.

Authors:  P Edelmann; J Gallant
Journal:  Cell       Date:  1977-01       Impact factor: 41.582

5.  The role of guanine nucleotides in protein biosynthesis.

Authors:  C G Kurland
Journal:  Biophys J       Date:  1978-06       Impact factor: 4.033

6.  A semi-quantitative treatment of missense and nonsense suppression in the strA and ram ribosomal mutants of Escherichia coli. Evaluation of some molecular parameters of translation in vivo.

Authors:  J Ninio
Journal:  J Mol Biol       Date:  1974-04-05       Impact factor: 5.469

7.  Mutational specificity of a conditional Escherichia coli mutator, mutD5.

Authors:  R G Fowler; G E Degnen; E C Cox
Journal:  Mol Gen Genet       Date:  1974

8.  Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity.

Authors:  J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

9.  The frequency of errors in protein biosynthesis.

Authors:  R B Loftfield; D Vanderjagt
Journal:  Biochem J       Date:  1972-08       Impact factor: 3.857

10.  Dissipation-error tradeoff in proofreading.

Authors:  C H Bennett
Journal:  Biosystems       Date:  1979-08       Impact factor: 1.973

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