Literature DB >> 7118916

Dynamic protein structures. Effects of pH on conformer stabilities at the ligand-binding site of bovine heart myoglobin carbonyl.

H Shimada, W S Caughey.   

Abstract

The single ligand-binding site of bovine myoglobin carbonyl exists in four discrete conformations as shown by four C--O stretch bands for the carbonyl ligand. Both this infrared spectrum and the visible spectrum are altered by changes in pH from 4.7 to 8.2 at 20 degrees C. The spectral changes can be related to monoprotonation or monodeprotonation at a protein residue with a pKa = 6.0 +/- 0.2. Below pH 5.5, an additional proton-coupled infrared spectral change is evident. Histidine is an appropriate site for pKa approximately 6; there are 13 histidines in the protein. However, the nature of the pH effects on infrared spectra indicates that neither the proximal nor the distal histidine is a likely site. The state of protonation of the protein has a marked effect on the relative stabilities of the four conformers but appears to have little effect on the discrete conformer structures per se in that C--O stretch band frequencies and shapes are nearly insensitive to changes in pH. The sum of the four integrated infrared band intensities is similarly insensitive. These findings provide strong support for the presence of four conformers of significantly different structure at the heme ligand-binding site and for rapid interconversions among these structures.

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Year:  1982        PMID: 7118916

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  17 in total

1.  Influence of the heme pocket conformation on the structure and vibrations of the Fe-CO bond in myoglobin: a QM/MM density functional study.

Authors:  C Rovira; B Schulze; M Eichinger; J D Evanseck; M Parrinello
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

2.  High-pressure 1H NMR study of pressure-induced structural changes in the heme environments of metcyanomyoglobins.

Authors:  Ryo Kitahara; Minoru Kato; Yoshihiro Taniguchi
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

3.  REDCRAFT: a tool for simultaneous characterization of protein backbone structure and motion from RDC data.

Authors:  Michael Bryson; Fang Tian; James H Prestegard; Homayoun Valafar
Journal:  J Magn Reson       Date:  2008-01-16       Impact factor: 2.229

4.  Analysis of oligomeric proteins during unfolding by pH and temperature.

Authors:  Pradip Bhattacharya; Tamil Ganeshan; Soumiyadeep Nandi; Alok Srivastava; Prashant Singh; Mohommad Rehan; Reshmi Rashkush; Naidu Subbarao; Andrew Lynn
Journal:  J Mol Model       Date:  2009-02-11       Impact factor: 1.810

5.  The stretching frequencies of bound alkyl isocyanides indicate two distinct ligand orientations within the distal pocket of myoglobin.

Authors:  George C Blouin; John S Olson
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

6.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

7.  Heme carbonyls: environmental effects on nu(C-O) and Fe-C/C-O bond length correlations.

Authors:  Nathan J Silvernail; Arne Roth; Charles E Schulz; Bruce C Noll; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2005-10-19       Impact factor: 15.419

8.  Perturbations of the distal heme pocket in human myoglobin mutants probed by infrared spectroscopy of bound CO: correlation with ligand binding kinetics.

Authors:  S Balasubramanian; D G Lambright; S G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-15       Impact factor: 11.205

9.  The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1.

Authors:  Christopher M Bianchetti; George C Blouin; Eduard Bitto; John S Olson; George N Phillips
Journal:  Proteins       Date:  2010-03

10.  Effects of crystallization on the heme-carbon monoxide moiety of bovine heart cytochrome c oxidase carbonyl.

Authors:  M Tsubaki; K Shinzawa; S Yoshikawa
Journal:  Biophys J       Date:  1992-12       Impact factor: 4.033

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