Literature DB >> 7088713

Primary and secondary structure of 5.8S rRNA from the silkgland of Bombyx mori.

H Fujiwara, Y Kawata, H Ishikawa.   

Abstract

Nucleotide sequence of 5.8S rRNA of the silkworm, Bombyx mori has been determined by gel sequencing methods. The 5.8S rRNA was the longest so far reported, with the 5'-terminal sequence several nucleotides longer than those of the other organisms. Upon constructing the secondary structure in accordance with the "burp gun" model (12), the Bombyx 5.8S rRNA formed a wide-open "muzzle" due to several unpaired bases at the ends. The overall structure also appeared less stable with less G . C pairs and more unpaired bases than that of the HeLa 5.8S rRNA. These structural features may be essential for those 5.8S rRNAs which interact with 28S rRNAs containing the hidden break to form a stable complex.

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Year:  1982        PMID： 7088713      PMCID： PMC320619          DOI： 10.1093/nar/10.7.2415

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  13 in total

1.  Sequence of a RNA templated by the 3'-OH RNA terminus of defective interfering particles of vesicular stomatitis virus.

Authors:  B L Semler; J Perrault; J Abelson; J J Holland
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

2.  Structural analyses of mammalian ribosomal ribonucleic acid and its precursors. Nucleotide sequence of ribosomal 5.8 S ribonucleic acid.

Authors:  R N Nazar; T O Sitz; H Busch
Journal:  J Biol Chem       Date:  1975-11-25       Impact factor: 5.157

3.  Structure of the 5.8S RNA component of the 5.8S-28S ribosomal RNA junction complex.

Authors:  N R Pace; T A Walker; E Schroeder
Journal:  Biochemistry       Date:  1977-11-29       Impact factor: 3.162

4.  Direct chemical method for sequencing RNA.

Authors:  D A Peattie
Journal:  Proc Natl Acad Sci U S A       Date:  1979-04       Impact factor: 11.205

5.  Improved estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal:  Nat New Biol       Date:  1973-11-14

6.  A DNA-like RNA fraction in the posterior silkgland of the wax moth, Galleria mellonella (L.).

Authors:  H Ishikawa; R W Newburgh
Journal:  Biochim Biophys Acta       Date:  1971-04-08

7.  Re-joining of the 18S fragments dissociated from the 28S ribosomal RNA of insect: a structural role of 5.8S RNA.

Authors:  H Ishikawa
Journal:  Biochem Biophys Res Commun       Date:  1979-09-27       Impact factor: 3.575

8.  A different approach to RNA sequencing.

Authors:  J Stanley; S Vassilenko
Journal:  Nature       Date:  1978-07-06       Impact factor: 49.962

9.  Sequence and secondary structure of Drosophila melanogaster 5.8S and 2S rRNAs and of the processing site between them.

Authors:  G N Pavlakis; B R Jordan; R M Wurst; J N Vournakis
Journal:  Nucleic Acids Res       Date:  1979-12-20       Impact factor: 16.971

10.  Mapping adenines, guanines, and pyrimidines in RNA.

Authors:  H Donis-Keller; A M Maxam; W Gilbert
Journal:  Nucleic Acids Res       Date:  1977-08       Impact factor: 16.971
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  6 in total

1.  Nucleotide sequences of the 5.8S rRNAs of a mollusc and a porifer, and considerations regarding the secondary structure of 5.8S rRNA and its interaction with 28S rRNA.

Authors:  D Ursi; A Vandenberghe; R De Wachter
Journal:  Nucleic Acids Res       Date:  1983-11-25       Impact factor: 16.971

2.  A universal model for the secondary structure of 5.8S ribosomal RNA molecules, their contact sites with 28S ribosomal RNAs, and their prokaryotic equivalent.

Authors:  J C Vaughn; S J Sperbeck; W J Ramsey; C B Lawrence
Journal:  Nucleic Acids Res       Date:  1984-10-11       Impact factor: 16.971

3.  Improved methods for structure probing in large RNAs: a rapid 'heterologous' sequencing approach is coupled to the direct mapping of nuclease accessible sites. Application to the 5' terminal domain of eukaryotic 28S rRNA.

Authors:  H L Qu; B Michot; J P Bachellerie
Journal:  Nucleic Acids Res       Date:  1983-09-10       Impact factor: 16.971

4.  Collection of published 5S and 5.8S ribosomal RNA sequences.

Authors:  V A Erdmann; J Wolters; E Huysmans; A Vandenberghe; R De Wachter
Journal:  Nucleic Acids Res       Date:  1984       Impact factor: 16.971

5.  Primary and secondary structures of Tetrahymena and aphid 5.8S rRNAs: structural features of 5.8S rRNA which interacts with the 28S rRNA containing the hidden break.

Authors:  H Fujiwara; H Ishikawa
Journal:  Nucleic Acids Res       Date:  1982-09-11       Impact factor: 16.971

6.  The nucleotide sequence of 5.8S rRNA from the posterior silk gland of the silkworm Philosamia cynthia ricini.

Authors:  Y X Feng; G Krupp; H J Gross
Journal:  Nucleic Acids Res       Date:  1982-10-25       Impact factor: 16.971
  6 in total

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