Literature DB >> 6815618

Primary and secondary structures of Tetrahymena and aphid 5.8S rRNAs: structural features of 5.8S rRNA which interacts with the 28S rRNA containing the hidden break.

H Fujiwara, H Ishikawa.   

Abstract

The Tetrahymena 5.8S rRNA is 154 nucleotides long, the shortest so far reported except for the split 5.8S rRNAs of Diptera (m5.8S plus 2S rRNA). In this molecule several nucleotides are deleted in the helix e (GC-rich stem) region. Upon constructing the secondary structure in accordance with "burp-gun" model, the Tetrahymena 5.8S rRNA forms a wide-open "muzzle" of the terminal regions due to both extra nucleotides and several unpaired bases. The aphid 5.8S rRNA consists of 161 nucleotides and can form stable helices in both terminal and helix e regions. As a whole, the secondary structure of Tetrahymena 5.8S rRNA resembles that of Bombyx 5.8S molecule while the aphid 5.8S rRNA shares several structural features with the HeLa 5.8S molecule. Likely, the 5.8S rRNA attached to the 28S rRNA with the hidden break differs in structure from those interacting with the 28S partners without the break. Nucleotide sequences of 5.8S rRNA in insects as well as in protozoans are not so conservative evolutionarily as in vertebrates.

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Substances：

Year:  1982        PMID： 6815618      PMCID： PMC320863          DOI： 10.1093/nar/10.17.5173

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  26 in total

1.  Structural analyses of mammalian ribosomal ribonucleic acid and its precursors. Nucleotide sequence of ribosomal 5.8 S ribonucleic acid.

Authors:  R N Nazar; T O Sitz; H Busch
Journal:  J Biol Chem       Date:  1975-11-25       Impact factor: 5.157

2.  Arthropod ribosomes. Integrity of ribosomal ribonucleic acids from aphids and water fleas.

Authors:  H Ishikawa
Journal:  Biochim Biophys Acta       Date:  1976-07-02

3.  Structure of the 5.8S RNA component of the 5.8S-28S ribosomal RNA junction complex.

Authors:  N R Pace; T A Walker; E Schroeder
Journal:  Biochemistry       Date:  1977-11-29       Impact factor: 3.162

4.  Nucleotide sequence of starfish initiator tRNA.

Authors:  Y Kuchino; M Kato; H Sugisaki; S Nishimura
Journal:  Nucleic Acids Res       Date:  1979-08-10       Impact factor: 16.971

5.  Direct chemical method for sequencing RNA.

Authors:  D A Peattie
Journal:  Proc Natl Acad Sci U S A       Date:  1979-04       Impact factor: 11.205

6.  Role of the 5'-terminal sequence in the RNA binding site of yeast 5.8 S rRNA.

Authors:  R N Nazar; T O Sitz
Journal:  FEBS Lett       Date:  1980-06-16       Impact factor: 4.124

7.  Studies on the sequence of the 3'-terminal region of turnip-yellow-mosaic-virus RNA.

Authors:  M Silberklang; A Prochiantz; A L Haenni; U L Rajbhandary
Journal:  Eur J Biochem       Date:  1977-02

8.  Re-joining of the 18S fragments dissociated from the 28S ribosomal RNA of insect: a structural role of 5.8S RNA.

Authors:  H Ishikawa
Journal:  Biochem Biophys Res Commun       Date:  1979-09-27       Impact factor: 3.575

9.  Sequence and secondary structure of Drosophila melanogaster 5.8S and 2S rRNAs and of the processing site between them.

Authors:  G N Pavlakis; B R Jordan; R M Wurst; J N Vournakis
Journal:  Nucleic Acids Res       Date:  1979-12-20       Impact factor: 16.971

10.  Mapping adenines, guanines, and pyrimidines in RNA.

Authors:  H Donis-Keller; A M Maxam; W Gilbert
Journal:  Nucleic Acids Res       Date:  1977-08       Impact factor: 16.971
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  9 in total

1.  What causes the aphid 28S rRNA to lack the hidden break?

Authors:  K Ogino; H Eda-Fujiwara; H Fujiwara; H Ishikawa
Journal:  J Mol Evol       Date:  1990-06       Impact factor: 2.395

2.  Sequence and variability of the 5.8S and 26S rRNA genes of Pneumocystis carinii.

Authors:  Y Liu; M Rocourt; S Pan; C Liu; M J Leibowitz
Journal:  Nucleic Acids Res       Date:  1992-07-25       Impact factor: 16.971

3.  Molecular mechanism of introduction of the hidden break into the 28S rRNA of insects: implication based on structural studies.

Authors:  H Fujiwara; H Ishikawa
Journal:  Nucleic Acids Res       Date:  1986-08-26       Impact factor: 16.971

Review 4.  Progress, pitfalls and parallel universes: a history of insect phylogenetics.

Authors:  Karl M Kjer; Chris Simon; Margarita Yavorskaya; Rolf G Beutel
Journal:  J R Soc Interface       Date:  2016-08       Impact factor: 4.118

5.  Nucleotide sequences of the 5.8S rRNAs of a mollusc and a porifer, and considerations regarding the secondary structure of 5.8S rRNA and its interaction with 28S rRNA.

Authors:  D Ursi; A Vandenberghe; R De Wachter
Journal:  Nucleic Acids Res       Date:  1983-11-25       Impact factor: 16.971

6.  A universal model for the secondary structure of 5.8S ribosomal RNA molecules, their contact sites with 28S ribosomal RNAs, and their prokaryotic equivalent.

Authors:  J C Vaughn; S J Sperbeck; W J Ramsey; C B Lawrence
Journal:  Nucleic Acids Res       Date:  1984-10-11       Impact factor: 16.971

7.  Nucleotide sequence of the 18S-26S rRNA intergene region of the sea urchin.

Authors:  B R Hindenach; D W Stafford
Journal:  Nucleic Acids Res       Date:  1984-02-10       Impact factor: 16.971

8.  Collection of published 5S and 5.8S ribosomal RNA sequences.

Authors:  V A Erdmann; J Wolters; E Huysmans; A Vandenberghe; R De Wachter
Journal:  Nucleic Acids Res       Date:  1984       Impact factor: 16.971

9.  Complex endonucleolytic cleavage pattern during early events in the processing of pre-rRNA in the lower eukaryote, Tetrahymena thermophila.

Authors:  K P Kister; B Müller; W A Eckert
Journal:  Nucleic Acids Res       Date:  1983-06-11       Impact factor: 16.971
  9 in total

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