Literature DB >> 7021316

Selective neutrality of 6PGD allozymes in E. coli and the effects of genetic background.

D Dykhuizen, D L Hartl.   

Abstract

We have used gluconate-limited chemostats to study selective differences between isogenic strains of Escherichia coli K12 into which four naturally occurring alleles coding for allozymes of 6-phosphogluconate dehydrogenase (6PGD) had been transferred. The limit of detectability of selection with our procedures is a selection coefficient of 0.5%. In the normal E. coli K12 genetic background, all alleles are selectively neutral or nearly neutral. The absence of detectable selection does, however, depend on genetic background and on such environmental factors as cell density. In a genetic background containing a mutation that cuts off the alternative metabolic route for 6-phosphogluconate, selection between allozymes can be detected, and the selection is in the direction expected from the measured apparent Km values of the allozymes. Even when the alternative metabolic route is not blocked by mutation, one of the 6PGD allozymes has a detrimental, but density-dependent, interaction with a mutation conferring resistance to bacteriophage T5. In all cases, the observed selection is due to the allozymes themselves (or to associated regulatory elements), as the selection disappears when the chemostats are limited by a different carbon source (ribose plus succinate). Nevertheless, the four alleles do seem to be selectively neutral or nearly neutral in the normal E. coli K12 genetic background. Moreover, the distribution of allele frequencies in natural populations of E. coli is in accord with the expectations of selective neutrality.

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Year:  1980        PMID: 7021316      PMCID: PMC1219302     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  13 in total

1.  The alcohol dehydrogenase polymorphism in populations of Drosophila melanogaster. I. Selection in different environments.

Authors:  W van Delden; A C Boerema; A Kamping
Journal:  Genetics       Date:  1978-09       Impact factor: 4.562

2.  Geographical patterns of four polymorphisms in Zoarces viviparus as evidence of selection.

Authors:  F B Christiansen; O Frydenberg
Journal:  Genetics       Date:  1974-08       Impact factor: 4.562

3.  Selection at the alcoholdehydrogenase locus in Drosophila melanogaster.

Authors:  W van Delden; A Kamping; H van Dijk
Journal:  Experientia       Date:  1975-04-15

Review 4.  Linkage map of Escherichia coli K-12, edition 6.

Authors:  B J Bachmann; K B Low
Journal:  Microbiol Rev       Date:  1980-03

5.  The relative quantities and catalytic activities of enzymes produced by alleles at the alcohol dehydrogenase locus in Drosophila melanogaster.

Authors:  T H Day; P C Hillier; B Clarke
Journal:  Biochem Genet       Date:  1974-02       Impact factor: 1.890

6.  A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura.

Authors:  R C Lewontin; J L Hubby
Journal:  Genetics       Date:  1966-08       Impact factor: 4.562

7.  Dynamics of correlated genetic systems. IV. Multilocus effects of ethanol stress environments.

Authors:  D R Cavener; M T Clegg
Journal:  Genetics       Date:  1978-11       Impact factor: 4.562

8.  Evidence for coadaptation in Avena barbata.

Authors:  R W Allard; G R Babbel; M T Clegg; A L Kahler
Journal:  Proc Natl Acad Sci U S A       Date:  1972-10       Impact factor: 11.205

9.  Environmental determination of selective significance or neutrality of amylase variants in Drosophila melanogaster.

Authors:  G De Jong; W Scharloo
Journal:  Genetics       Date:  1976-09       Impact factor: 4.562

10.  Genetic diversity and structure in Escherichia coli populations.

Authors:  R K Selander; B R Levin
Journal:  Science       Date:  1980-10-31       Impact factor: 47.728

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  79 in total

1.  Complementary advantageous substitutions in the evolution of an antiviral RNase of higher primates.

Authors:  Jianzhi Zhang; Helene F Rosenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-26       Impact factor: 11.205

Review 2.  Maximum likelihood methods for detecting adaptive evolution after gene duplication.

Authors:  Joseph P Bielawski; Ziheng Yang
Journal:  J Struct Funct Genomics       Date:  2003

3.  Measuring selection coefficients below 10(-3): method, questions, and prospects.

Authors:  Romain Gallet; Tim F Cooper; Santiago F Elena; Thomas Lenormand
Journal:  Genetics       Date:  2011-10-31       Impact factor: 4.562

4.  Theoretical study of near neutrality. I. Heterozygosity and rate of mutant substitution.

Authors:  T Ohta; H Tachida
Journal:  Genetics       Date:  1990-09       Impact factor: 4.562

5.  Population growth enhances the mean fixation time of neutral mutations and the persistence of neutral variation.

Authors:  D Waxman
Journal:  Genetics       Date:  2012-03-16       Impact factor: 4.562

6.  On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient.

Authors:  Rutger Hermsen; J Barrett Deris; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

Review 7.  Mutational effects and the evolution of new protein functions.

Authors:  Misha Soskine; Dan S Tawfik
Journal:  Nat Rev Genet       Date:  2010-08       Impact factor: 53.242

8.  Integrating evolutionary and functional approaches to infer adaptation at specific loci.

Authors:  Jay F Storz; Christopher W Wheat
Journal:  Evolution       Date:  2010-09       Impact factor: 3.694

9.  Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome.

Authors:  Peter Andolfatto
Journal:  Genome Res       Date:  2007-11-07       Impact factor: 9.043

10.  A molecular investigation of genotype by environment interactions.

Authors:  A M Dean
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

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