Literature DB >> 7013801

pH variation of isotope effects in enzyme-catalyzed reactions. 2. Isotope-dependent step not pH dependent. Kinetic mechanism of alcohol dehydrogenase.

P F Cook, W W Cleland.   

Abstract

Theory is developed for th pH dependence of isotope effects in a mechanism where a pH-dependent step precedes the isotope-sensitive bond-breaking step, and the rate of the latter varies only slightly with the state of protonation of the acid-base catalytic group on the enzyme. In such a mechanism, the isotope effects fall to 1.0 in the forward direction and to the equilibrium isotope effect in the reverse direction at pH values where the pH-sensitive step becomes totally rate limiting in the reverse direction. This model accurately describes the kinetics of yeast alcohol dehydrogenase, where V/Kacetone and the isotope effects on V2-propanol and V/K2-propanol decrease above a pK of 8.8 (both isotope effects becoming 1.0 at pH 10). The model also fits the kinetics of liver alcohol dehydrogenase, where Vcyclohexanol and V/Kcyclohexanol decrease below pKs of 6.2 and 7.1, and above pKs of 9.5 and 10.3. pKi trifluoroethanol decreases below a pK of 7.2, and above pK of 10.1, while pKi isobutyramide drops above a pK of 10.0. Vcyclohexanone decreases above a pK of 8.4 while V/Kcyclohexanone decreases above pKs of 8.8 and 9.7. Isotope effects on V/Kcyclohexanol and V/Kcyclohexanone decrease above identical pKs of 9.4 to values of 1 and 0.88, respectively, at pH 11. Comparison of a value of 2.5 for D(V/Kcyclohexanol) with an average value of 5.53 for T(V/Kcyclohexanol) allowed circulation of 6.3 as the intrinsic deuterium isotope effect. These data suggest that E-DPN-alcohol undergoes a proton transfer to the enzyme to give an EH-DPN-alkoxide complex which can lose its proton at high pH to give E-DPN-alkoxide and that both of these alkoxide complexes undergo hydride transfer to give DPNH and ketone. the alkoxide intermediate is not free to dissociate until it is protonated, either because it is coordinated to Zn or because the enzyme is in a closed catalytic configuration.

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Year:  1981        PMID: 7013801     DOI: 10.1021/bi00510a015

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme.

Authors:  M Duane Smith; Richard A Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-26       Impact factor: 11.205

2.  A proposed proton shuttle mechanism for saccharopine dehydrogenase from Saccharomyces cerevisiae.

Authors:  Hengyu Xu; Susan S Alguindigue; Ann H West; Paul F Cook
Journal:  Biochemistry       Date:  2007-01-23       Impact factor: 3.162

3.  Contribution of liver alcohol dehydrogenase to metabolism of alcohols in rats.

Authors:  Bryce V Plapp; Kevin G Leidal; Bruce P Murch; David W Green
Journal:  Chem Biol Interact       Date:  2015-01-29       Impact factor: 5.192

Review 4.  Heavy atom labeled nucleotides for measurement of kinetic isotope effects.

Authors:  Benjamin P Weissman; Nan-Sheng Li; Darrin York; Michael Harris; Joseph A Piccirilli
Journal:  Biochim Biophys Acta       Date:  2015-03-27

5.  Theory and Application of the Relationship Between Steady-State Isotope Effects on Enzyme Intermediate Concentrations and Net Rate Constants.

Authors:  Mark W Ruszczycky; Hung-Wen Liu
Journal:  Methods Enzymol       Date:  2017-08-31       Impact factor: 1.600

6.  Further theoretical refinement on the internal thermodynamics of perfect enzymes.

Authors:  G C Tian
Journal:  Biochem J       Date:  1987-12-01       Impact factor: 3.857

Review 7.  A reevaluation of the origin of the rate acceleration for enzyme-catalyzed hydride transfer.

Authors:  Archie C Reyes; Tina L Amyes; John P Richard
Journal:  Org Biomol Chem       Date:  2017-10-31       Impact factor: 3.876

8.  Induced fit and the catalytic mechanism of isocitrate dehydrogenase.

Authors:  Susana Gonçalves; Stephen P Miller; Maria A Carrondo; Anthony M Dean; Pedro M Matias
Journal:  Biochemistry       Date:  2012-08-27       Impact factor: 3.162

Review 9.  Combining solvent isotope effects with substrate isotope effects in mechanistic studies of alcohol and amine oxidation by enzymes.

Authors:  Paul F Fitzpatrick
Journal:  Biochim Biophys Acta       Date:  2014-10-30

10.  On the role of Brønsted catalysis in Pseudomonas fluorescens mannitol 2-dehydrogenase.

Authors:  Mario Klimacek; Kathryn L Kavanagh; David K Wilson; Bernd Nidetzky
Journal:  Biochem J       Date:  2003-10-01       Impact factor: 3.857

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