Literature DB >> 6954515

Catalytic mechanism of glycogen phosphorylase: pyridoxal(5')diphospho(1)-alpha-D-glucose as a transition-state analogue.

M Takagi, T Fukui, S Shimomura.   

Abstract

Pyridoxal(5')diphospho(1)-alpha-D-glucose was used to reconstitute glycogen phosphorylase beta (1,4-alpha-D-glucan:orthophosphate alpha-D-glucosyltransferase, EC 2.4.1.1) from rabbit muscle, replacing the natural pyridoxal 5'-phosphate coenzyme. Incubation of the reconstituted enzyme alone resulted in the gradual cleavage of the synthetic cofactor to pyridoxal 5'-phosphate, which caused slow reactivation of the enzyme. The addition of maltopentaose or glycogen altered the mode of cleavage; the cofactor was rapidly decomposed to pyridoxal 5'-diphosphate. The radioactive glucose moiety released from pyridoxal(5')diphospho(1)-alpha-D-[14C]glucose was incorporated into the outer chain of glycogen, forming an alpha-1,4-glucosidic linkage. These results show that the glucosyl transfer reaction discovered mimics the normal catalysis of this enzyme, and they strongly support the catalytic mechanism in which the coenzyme phosphate acts as a catalyst by direct interaction with the phosphate of the substrate, forming the pyrophosphate-like transition intermediate.

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Year:  1982        PMID: 6954515      PMCID: PMC346497          DOI: 10.1073/pnas.79.12.3716

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Effect of phosphate analogues on the activity of pyridoxal reconstituted glycogen phosphorylase.

Authors:  R F Parrish; R J Uhing; D J Graves
Journal:  Biochemistry       Date:  1977-11-01       Impact factor: 3.162

2.  Amino-acid sequence of the pyridoxal-phosphate-binding site in Escherichia coli maltodextrin phosphorylase.

Authors:  K H Schächtele; E Schiltz; D Palm
Journal:  Eur J Biochem       Date:  1978-12

3.  The structure of glycogen phosphorylase alpha at 2.5 A resolution.

Authors:  S Sprang; R J Fletterick
Journal:  J Mol Biol       Date:  1979-07-05       Impact factor: 5.469

4.  Amino acid sequence of two functional sites in yeast glycogen phosphorylase.

Authors:  K Lerch; E H Fischer
Journal:  Biochemistry       Date:  1975-05-06       Impact factor: 3.162

5.  Crystallographic studies on the activity of glycogen phosphorylase b.

Authors:  I T Weber; L N Johnson; K S Wilson; D G Yeates; D L Wild; J A Jenkins
Journal:  Nature       Date:  1978-08-03       Impact factor: 49.962

6.  Characterization of the pyridoxal phosphate site in glycogen phosphorylase b from rabbit muscle.

Authors:  S Shimomura; T Fukui
Journal:  Biochemistry       Date:  1978-12-12       Impact factor: 3.162

7.  Affinity labeling of the cofactor site in glycogen phosphorylase b with a pyridoxal 5'-phosphate analog.

Authors:  S Shimomura; K Nakano; T Fukui
Journal:  Biochem Biophys Res Commun       Date:  1978-05-30       Impact factor: 3.575

8.  Amino acid sequence around the pyridoxal 5'-phosphate binding site in potato phosphorylase.

Authors:  K Nakano; S Wakabayashi; T Hase; H Matsubara; T Fukui
Journal:  J Biochem       Date:  1978-04       Impact factor: 3.387

9.  Location of pyridoxal phosphate in glycogen phosphorylase a.

Authors:  J Sygusch; N B Madsen; P J Kasvinsky; R J Fletterick
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

10.  Complete amino acid sequence of rabbit muscle glycogen phosphorylase.

Authors:  K Titani; A Koide; J Hermann; L H Ericsson; S Kumar; R D Wade; K A Walsh; H Neurath; E H Fischer
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

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  7 in total

1.  The α-glucan phosphorylase MalP of Corynebacterium glutamicum is subject to transcriptional regulation and competitive inhibition by ADP-glucose.

Authors:  Lina Clermont; Arthur Macha; Laura M Müller; Sami M Derya; Philipp von Zaluskowski; Alexander Eck; Bernhard J Eikmanns; Gerd M Seibold
Journal:  J Bacteriol       Date:  2015-02-09       Impact factor: 3.490

2.  Activator anion binding site in pyridoxal phosphorylase b: the binding of phosphite, phosphate, and fluorophosphate in the crystal.

Authors:  N G Oikonomakos; S E Zographos; K E Tsitsanou; L N Johnson; K R Acharya
Journal:  Protein Sci       Date:  1996-12       Impact factor: 6.725

Review 3.  B6-responsive disorders: a model of vitamin dependency.

Authors:  Peter T Clayton
Journal:  J Inherit Metab Dis       Date:  2006 Apr-Jun       Impact factor: 4.982

4.  Control of phosphorylase b conformation by a modified cofactor: crystallographic studies on R-state glycogen phosphorylase reconstituted with pyridoxal 5'-diphosphate.

Authors:  D D Leonidas; N G Oikonomakos; A C Papageorgiou; K R Acharya; D Barford; L N Johnson
Journal:  Protein Sci       Date:  1992-09       Impact factor: 6.725

5.  31P NMR relaxation studies of the activation of the coenzyme phosphate of glycogen phosphorylase. The role of motion of the bound phosphate.

Authors:  S G Withers; N B Madsen; B D Sykes
Journal:  Biophys J       Date:  1985-12       Impact factor: 4.033

6.  Quantitative description of the absorption spectra of the coenzyme in glycogen phosphorylases based on log-normal distribution curves.

Authors:  J Donoso; F Muñoz; F Garcia Blanco
Journal:  Biochem J       Date:  1993-05-15       Impact factor: 3.857

7.  Catalysis in the crystal: synchrotron radiation studies with glycogen phosphorylase b.

Authors:  J Hajdu; K R Acharya; D I Stuart; P J McLaughlin; D Barford; N G Oikonomakos; H Klein; L N Johnson
Journal:  EMBO J       Date:  1987-02       Impact factor: 11.598

  7 in total

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