Literature DB >> 6933447

The tetramer d(CpGpCpG) crystallizes as a left-handed double helix.

J L Crawford, F J Kolpak, A H Wang, G J Quigley, J H van Boom, G van der Marel, A Rich.   

Abstract

The structure of the tetramer d(CpGpCpG) has been solved by x-ray analysis in two different crystal forms with and without spermine cations. The molecules crystallize in hexagonal unit cells and they form a left-handed double helix of Z-DNA similar to that previously reported for the hexamer d(CpGpCpGpCpG). In the crystal lattice the molecules stack together to form a virtually continuous left-handed double helix in which every fourth phosphate group is missing. The stacking of bases upon each other is similar to that seen in the hexamer. However, the base pairs have a slightly different orientation in that the cytosine residues are slightly removed from the axis of the molecule compared to the position they occupy in the hexamer. The structures are similar in two crystal forms with and without spermine cations.

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Year:  1980        PMID: 6933447      PMCID: PMC349759          DOI: 10.1073/pnas.77.7.4016

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  7 in total

1.  Double helix at atomic resolution.

Authors:  J M Rosenberg; N C Seeman; J J Kim; F L Suddath; H B Nicholas; A Rich
Journal:  Nature       Date:  1973-05-18       Impact factor: 49.962

2.  Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC).

Authors:  F M Pohl; T M Jovin
Journal:  J Mol Biol       Date:  1972-06-28       Impact factor: 5.469

3.  Molecular structure of a left-handed double helical DNA fragment at atomic resolution.

Authors:  A H Wang; G J Quigley; F J Kolpak; J L Crawford; J H van Boom; G van der Marel; A Rich
Journal:  Nature       Date:  1979-12-13       Impact factor: 49.962

4.  A salt-induced conformational change in crystals of the synthetic DNA tetramer d(CpGpCpG).

Authors:  H R Drew; R E Dickerson; K Itakura
Journal:  J Mol Biol       Date:  1978-11-15       Impact factor: 5.469

5.  Molecular structure of a double helical DNA fragment intercalator complex between deoxy CpG and a terpyridine platinum compound.

Authors:  A H Wang; J Nathans; G van der Marel; J H van Boom; A Rich
Journal:  Nature       Date:  1978-11-30       Impact factor: 49.962

6.  A crystalline fragment of the double helix: the structure of the dinucleoside phosphate guanylyl-3',5'-cytidine.

Authors:  R O Day; N C Seeman; J M Rosenberg; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1973-03       Impact factor: 11.205

7.  Left-handed DNA helices.

Authors:  S Arnott; R Chandrasekaran; D L Birdsall; A G Leslie; R L Ratliff
Journal:  Nature       Date:  1980-02-21       Impact factor: 49.962

  7 in total
  45 in total

1.  Free radical yields in crystalline DNA X-irradiated at 4 K.

Authors:  M G Debije; W A Bernhard
Journal:  Radiat Res       Date:  1999-12       Impact factor: 2.841

2.  The yield of strand breaks resulting from direct-type effects in crystalline DNA X-irradiated at 4 K and room temperature.

Authors:  M G Debije; Y Razskazovskiy; W A Bernhard
Journal:  J Am Chem Soc       Date:  2001-03-28       Impact factor: 15.419

3.  On the efficiency of hole and electron transfer from the hydration layer to DNA: An EPR study of crystalline DNA X-irradiated at 4 K.

Authors:  M G Debije; M D Strickler; W A Bernhard
Journal:  Radiat Res       Date:  2000-08       Impact factor: 2.841

4.  Evidence for a new Z-type left-handed DNA helix: properties of Z(WC)-DNA.

Authors:  A T Ansevin; A H Wang
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

5.  What is the initial chemical precursor of DNA strand breaks generated by direct-type effects?

Authors:  Shubhadeep Purkayastha; William A Bernhard
Journal:  J Phys Chem B       Date:  2004-11-25       Impact factor: 2.991

6.  Some rules for predicting the base-sequence dependence of DNA conformation.

Authors:  W L Peticolas; Y Wang; G A Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

7.  Junction between Z and B conformations in a DNA restriction fragment: evaluation by Raman spectroscopy.

Authors:  R M Wartell; J Klysik; W Hillen; R D Wells
Journal:  Proc Natl Acad Sci U S A       Date:  1982-04       Impact factor: 11.205

8.  The Raman spectra of left-handed DNA oligomers incorporating adenine-thymine base pairs+.

Authors:  J M Benevides; A H Wang; G A van der Marel; J H van Boom; A Rich; G J Thomas
Journal:  Nucleic Acids Res       Date:  1984-07-25       Impact factor: 16.971

9.  Right-handed and left-handed DNA: studies of B- and Z-DNA by using proton nuclear Overhauser effect and P NMR.

Authors:  D J Patel; S A Kozlowski; A Nordheim; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

10.  Conformational transitions of poly(dA-dC).poly(dG-dT) induced by high salt or in ethanolic solution.

Authors:  C Zimmer; S Tymen; C Marck; W Guschlbauer
Journal:  Nucleic Acids Res       Date:  1982-02-11       Impact factor: 16.971

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