Literature DB >> 4514996

A crystalline fragment of the double helix: the structure of the dinucleoside phosphate guanylyl-3',5'-cytidine.

R O Day, N C Seeman, J M Rosenberg, A Rich.   

Abstract

The sodium salt of guanylyl-3',5'-cytidine crystallizes in a monoclinic unit cell with one molecule in the asymmetric unit. Each molecule is related to another molecule by a 2-fold rotation axis which results in the formation of an antiparallel, right-handed double helix with complementary hydrogen bonding between the guanine and cytosine residues. The crystal is heavily hydrated with 36 water molecules in the unit cell. The geometry of this crystalline double helix is very similar to those which have been derived from studies of fiber x-ray diffraction patterns of double-stranded RNA, even though the latter do not yield data at atomic resolution.

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Year:  1973        PMID: 4514996      PMCID: PMC433373          DOI: 10.1073/pnas.70.3.849

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

1.  THE MOLECULAR CONFIGURATION OF DEOXYRIBONUCLEIC ACID. IV. X-RAY DIFFRACTION STUDY OF THE A FORM.

Authors:  W FULLER; M H WILKINS; H R WILSON; L D HAMILTON
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

2.  The structure of RNA. Reovirus RNA and transfer RNA have similar three-dimensional structures, which differ from DNA.

Authors:  R LANGRIDGE; P J GOMATOS
Journal:  Science       Date:  1963-08-23       Impact factor: 47.728

Review 3.  The crystal structures of purines, pyrimidines and their intermolecular complexes.

Authors:  D Voet; A Rich
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1970

4.  Optimised parameters for RNA double-helices.

Authors:  S Arnott; D W Hukins; S D Dover
Journal:  Biochem Biophys Res Commun       Date:  1972-09-26       Impact factor: 3.575

5.  Nucleic acid conformation: crystal structure of a naturally occurring dinucleoside phosphate (UpA).

Authors:  N C Seeman; J L Sussman; H N Berman; S H Kim
Journal:  Nat New Biol       Date:  1971-09-15

6.  The crystal structure of a hydrogen bonded complex of deoxyguanosine and 5-bromodeoxycytidine.

Authors:  A E Haschemeyer; H M Sobell
Journal:  Acta Crystallogr       Date:  1965-07-10

7.  Crystal structures of two complexes containing guanine and cytosine derivatives.

Authors:  E J O'Brien
Journal:  Acta Crystallogr       Date:  1967-07-10

8.  Structure of a purine-pyrimidine crystalline complex: 9-ethylguanine with 1-methyl-5-fluorocytosine.

Authors:  E J O'Brien
Journal:  J Mol Biol       Date:  1966-12-28       Impact factor: 5.469

9.  Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain.

Authors:  S H Kim; G J Quigley; F L Suddath; A McPherson; D Sneden; J J Kim; J Weinzierl; A Rich
Journal:  Science       Date:  1973-01-19       Impact factor: 47.728

10.  Crystal structure of a naturally occurring dinucleoside phoaphate: uridylyl 3',5'-adenosine phosphate model for RNA chain folding.

Authors:  J L Sussman; N C Seeman; S H Kim; H M Berman
Journal:  J Mol Biol       Date:  1972-05-28       Impact factor: 5.469

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  15 in total

1.  Sequence-specific recognition of double helical nucleic acids by proteins.

Authors:  N C Seeman; J M Rosenberg; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1976-03       Impact factor: 11.205

2.  X-ray crystallographic visualization of drug-nucleic acid intercalative binding: structure of an ethidium-dinucleoside monophosphate crystalline complex, Ethidium: 5-iodouridylyl (3'-5') adenosine.

Authors:  C C Tsai; S C Jain; H M Sobell
Journal:  Proc Natl Acad Sci U S A       Date:  1975-02       Impact factor: 11.205

3.  Structure of poly 8-bromoadenylic acid; conformational studies by CPF energy calculations.

Authors:  G Govil; C Fisk; F B Howard; H T Miles
Journal:  Nucleic Acids Res       Date:  1977-08       Impact factor: 16.971

Review 4.  New insights into Hoogsteen base pairs in DNA duplexes from a structure-based survey.

Authors:  Huiqing Zhou; Bradley J Hintze; Isaac J Kimsey; Bharathwaj Sathyamoorthy; Shan Yang; Jane S Richardson; Hashim M Al-Hashimi
Journal:  Nucleic Acids Res       Date:  2015-03-26       Impact factor: 16.971

5.  Transfer RNA and the translation apparatus in the origin of life.

Authors:  A Rich
Journal:  Orig Life       Date:  1974 Jan-Apr

6.  A proposed model for interaction of polypeptides with RNA.

Authors:  C W Carter; J Kraut
Journal:  Proc Natl Acad Sci U S A       Date:  1974-02       Impact factor: 11.205

7.  The tetramer d(CpGpCpG) crystallizes as a left-handed double helix.

Authors:  J L Crawford; F J Kolpak; A H Wang; G J Quigley; J H van Boom; G van der Marel; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1980-07       Impact factor: 11.205

Review 8.  Crystallographic studies of chemically modified nucleic acids: a backward glance.

Authors:  Martin Egli; Pradeep S Pallan
Journal:  Chem Biodivers       Date:  2010-01       Impact factor: 2.408

9.  Molecular structure of deoxyadenylyl-3'-methylphosphonate-5'-thymidine dihydrate, (d-ApT x 2H2O), a dinucleoside monophosphate with neutral phosphodiester backbone. An X-ray crystal study.

Authors:  K K Chacko; K Lindner; W Saenger; P S Miller
Journal:  Nucleic Acids Res       Date:  1983-05-11       Impact factor: 16.971

10.  Backbone conformations in secondary and tertiary structural units of nucleic acids. Constraint in the phosphodiester conformation.

Authors:  N Yathindra; M Sundaralingam
Journal:  Proc Natl Acad Sci U S A       Date:  1974-09       Impact factor: 11.205

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