Literature DB >> 6466317

Low-frequency vibrations of DNA molecules.

K C Chou.   

Abstract

A model for calculating the low-frequency modes in DNA molecules is presented. The present model is associated with the 'breathing' of a DNA molecule as well as its complementary hydrogen bonds. The calculated results show excellent agreement with the observed low-frequency wavenumber (30 cm-1). Consequently, such an internal motion as reflected in the proposed model might be the origin of the observed low-frequency vibration in DNA molecules. This is helpful for investigating the relevant biological functions, which so far have been discussed by many scientists.

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Year:  1984        PMID： 6466317      PMCID： PMC1143999          DOI： 10.1042/bj2210027

Source DB:  PubMed          Journal:  Biochem J        ISSN： 0264-6021            Impact factor:   3.857


  13 in total

Review 1.  Statistical time events in enzymes: a physical assessment.

Authors:  G Careri; P Fasella; E Gratton
Journal:  CRC Crit Rev Biochem       Date:  1975-08

2.  Breathing mode of conformational fluctuations in globular proteins.

Authors:  Y Suezaki; N Go
Journal:  Int J Pept Protein Res       Date:  1975

3.  Energy and negentropy in enzymic catalysis.

Authors:  S Ji
Journal:  Ann N Y Acad Sci       Date:  1974-02-18       Impact factor: 5.691

4.  Conformationally dependent low-frequency motions of proteins by laser Raman spectroscopy.

Authors:  K G Brown; S C Erfurth; E W Small; W L Peticolas
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

5.  Phonon dispersion curves and normal coordinate analysis of -poly-L-alanine.

Authors:  B Fanconi; E W Small; W L Peticolas
Journal:  Biopolymers       Date:  1971       Impact factor: 2.505

6.  Vibrational frequencies and modes of alpha-helix.

Authors:  K Ito; T Shimanouchi
Journal:  Biopolymers       Date:  1970       Impact factor: 2.505

7.  Structural and energetic considerations of wave propagation in DNA.

Authors:  H M Sobell; E D Lozansky; M Lessen
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1979

8.  Identification of low-frequency modes in protein molecules.

Authors:  K C Chou
Journal:  Biochem J       Date:  1983-12-01       Impact factor: 3.857

9.  Base-pair opening and closing reactions in the double helix. A stopped-flow hydrogen exchange study in poly(rA).poly(rU).

Authors:  C Mandal; N R Kallenbach; S W Englander
Journal:  J Mol Biol       Date:  1979-12-05       Impact factor: 5.469

10.  Low-frequency modes in the Raman spectra of proteins.

Authors:  P C Painter; L E Mosher; C Rhoads
Journal:  Biopolymers       Date:  1982-07       Impact factor: 2.505
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  11 in total

1.  Sequence-specific flexibility organization of splicing flanking sequence and prediction of splice sites in the human genome.

Authors:  Yongchun Zuo; Pengfei Zhang; Li Liu; Tao Li; Yong Peng; Guangpeng Li; Qianzhong Li
Journal:  Chromosome Res       Date:  2014-04-12       Impact factor: 5.239

2.  Low-frequency motions in protein molecules. Beta-sheet and beta-barrel.

Authors:  K C Chou
Journal:  Biophys J       Date:  1985-08       Impact factor: 4.033

3.  Raman Signal Enhancement by Quasi-Fractal Geometries of Au Nanoparticles.

Authors:  Richard E Darienzo; Tatsiana Mironava; Rina Tannenbaum
Journal:  J Nanosci Nanotechnol       Date:  2019-08-01

4.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

5.  Quasi-continuum models of twist-like and accordion-like low-frequency motions in DNA.

Authors:  K C Chou; G M Maggiora; B Mao
Journal:  Biophys J       Date:  1989-08       Impact factor: 4.033

6.  iRNA-PseColl: Identifying the Occurrence Sites of Different RNA Modifications by Incorporating Collective Effects of Nucleotides into PseKNC.

Authors:  Pengmian Feng; Hui Ding; Hui Yang; Wei Chen; Hao Lin; Kuo-Chen Chou
Journal:  Mol Ther Nucleic Acids       Date:  2017-03-29

7.  iRNA-AI: identifying the adenosine to inosine editing sites in RNA sequences.

Authors:  Wei Chen; Pengmian Feng; Hui Yang; Hui Ding; Hao Lin; Kuo-Chen Chou
Journal:  Oncotarget       Date:  2017-01-17

8.  Trends in global warming and evolution of matrix protein 2 family from influenza A virus.

Authors:  Shao-Min Yan; Guang Wu
Journal:  Interdiscip Sci       Date:  2009-11-14       Impact factor: 2.233

9.  Low-frequency vibrational modes in G-quadruplexes reveal the mechanical properties of nucleic acids.

Authors:  Mario González-Jiménez; Gopakumar Ramakrishnan; Nikita V Tukachev; Hans M Senn; Klaas Wynne
Journal:  Phys Chem Chem Phys       Date:  2021-06-04       Impact factor: 3.676

10.  Scoring function for DNA-drug docking of anticancer and antiparasitic compounds based on spectral moments of 2D lattice graphs for molecular dynamics trajectories.

Authors:  Lázaro G Pérez-Montoto; Lourdes Santana; Humberto González-Díaz
Journal:  Eur J Med Chem       Date:  2009-06-17       Impact factor: 6.514
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