Literature DB >> 6835841

Conformations of A-DNA and B-DNA in agreement with fiber X-ray and infrared dichroism.

S Premilat, G Albiser.   

Abstract

Two right handed double helices are proposed as models for DNA fibers in respectively the A and the B form. The present conformations have geometrical parameters which agree very well with fiber X-ray and the orientation of their phosphate groups is in good accordance with infrared dichroïsm measurements. Dihedral angles and complete sets of atomic coordinates are given together with stereo-views and curves of the calculated diffracted intensities. Results are compared with experimental data and with preceding DNA models.

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Year:  1983        PMID： 6835841      PMCID： PMC325843          DOI： 10.1093/nar/11.6.1897

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  14 in total

1.  X-ray diffraction study of three DNA fibres with different base compositions.

Authors:  S Premilat; G Albiser
Journal:  J Mol Biol       Date:  1975-11-25       Impact factor: 5.469

2.  A possible conformation for double-stranded polynucleotides.

Authors:  G A Rodley; R S Scobie; R H Bates; R M Lewitt
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

3.  A reinterpretation of the infrared linear dichroism of oriented nucleic acid films and a calculation of some effective partial changes on the ribose phosphate backbone.

Authors:  C P Beetz; G Ascarelli; S Arnott
Journal:  Biophys J       Date:  1979-10       Impact factor: 4.033

4.  Refinement of the structure of B-DNA and implications for the analysis of x-ray diffraction data from fibers of biopolymers.

Authors:  S Arnott; D W Hukins
Journal:  J Mol Biol       Date:  1973-12-05       Impact factor: 5.469

5.  Optimised parameters for A-DNA and B-DNA.

Authors:  S Arnott; D W Hukins
Journal:  Biochem Biophys Res Commun       Date:  1972-06-28       Impact factor: 3.575

6.  The molecular structure of d(ICpCpGpG), a fragment of right-handed double helical A-DNA.

Authors:  B N Conner; T Takano; S Tanaka; K Itakura; R E Dickerson
Journal:  Nature       Date:  1982-01-28       Impact factor: 49.962

7.  Crystal structure analysis of a complete turn of B-DNA.

Authors:  R Wing; H Drew; T Takano; C Broka; S Tanaka; K Itakura; R E Dickerson
Journal:  Nature       Date:  1980-10-23       Impact factor: 49.962

8.  Polymorphism of DNA double helices.

Authors:  A G Leslie; S Arnott; R Chandrasekaran; R L Ratliff
Journal:  J Mol Biol       Date:  1980-10-15       Impact factor: 5.469

9.  Geometry of the phosphodiester backbone in the A form of deoxyribonucleic acid determined by phosphorus-31 nuclear magnetic resonance spectroscopy.

Authors:  H Shindo; J B Wooten; S B Zimmerman
Journal:  Biochemistry       Date:  1981-02-17       Impact factor: 3.162

10.  Structure of a B-DNA dodecamer: conformation and dynamics.

Authors:  H R Drew; R M Wing; T Takano; C Broka; S Tanaka; K Itakura; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  1981-04       Impact factor: 11.205
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  8 in total

1.  3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

Authors:  Xiang-Jun Lu; Wilma K Olson
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

2.  Study of structure, base-pair opening kinetics and proton exchange mechanism of the d-(AATTGCAATT) self-complementary oligodeoxynucleotide in solution.

Authors:  M Kochoyan; G Lancelot; J L Leroy
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

3.  Structure of A-DNA in solution.

Authors:  E Charney; H H Chen
Journal:  Proc Natl Acad Sci U S A       Date:  1987-03       Impact factor: 11.205

4.  Conformational transitions of the phosphodiester backbone in native DNA: two-dimensional magic-angle-spinning 31P-NMR of DNA fibers.

Authors:  Z Song; O N Antzutkin; Y K Lee; S C Shekar; A Rupprecht; M H Levitt
Journal:  Biophys J       Date:  1997-09       Impact factor: 4.033

5.  Human articular cartilage and fibrocartilage: a study with high-angle x-ray diffraction.

Authors:  G Albiser; P Netter; G Faure; P Horn; J P Delagoutte; A Gaucher
Journal:  Ann Rheum Dis       Date:  1984-12       Impact factor: 19.103

6.  Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures.

Authors:  Guohui Zheng; Xiang-Jun Lu; Wilma K Olson
Journal:  Nucleic Acids Res       Date:  2009-05-27       Impact factor: 16.971

7.  Solvent effects on ionization potentials of guanine runs and chemically modified guanine in duplex DNA: effect of electrostatic interaction and its reduction due to solvent.

Authors:  Satoshi Yokojima; Norifumi Yoshiki; Wataru Yanoi; Akira Okada
Journal:  J Phys Chem B       Date:  2009-12-24       Impact factor: 2.991

8.  Assembly and structural analysis of a covalently closed nano-scale DNA cage.

Authors:  Felicie F Andersen; Bjarne Knudsen; Cristiano Luis Pinto Oliveira; Rikke F Frøhlich; Dinna Krüger; Jörg Bungert; Mavis Agbandje-McKenna; Robert McKenna; Sissel Juul; Christopher Veigaard; Jørn Koch; John L Rubinstein; Bernt Guldbrandtsen; Marianne S Hede; Göran Karlsson; Anni H Andersen; Jan Skov Pedersen; Birgitta R Knudsen
Journal:  Nucleic Acids Res       Date:  2007-12-20       Impact factor: 16.971
  8 in total

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