Literature DB >> 7432492

Crystal structure analysis of a complete turn of B-DNA.

R Wing, H Drew, T Takano, C Broka, S Tanaka, K Itakura, R E Dickerson.   

Abstract

DNA is probably the most discussed and least observed of all biological macromolecules. Although its role in biology is a central one, with many examples such as operators and restriction sites where specific base sequences have control functions or interact with specific enzymes, the structures that DNA can adopt have been based until now only on sequence-averaged fibre diffraction patterns. Recent improvements in triester synthesis methods have made possible the preparation of sufficient homogeneous DNA of predetermined sequence for crystallization and X-ray structure analysis. We report here the first single-crystal structure analysis of more than a complete turn of right-handed B-DNA, with the self-complementary dodecamer sequence d(CpGpCpGPApApTpTpCpGpCpG) or CGCGAATTCGCG.

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Year:  1980        PMID: 7432492     DOI: 10.1038/287755a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  170 in total

1.  Structure, interaction, dynamics and solvent effects on the DNA-EcoRI complex in aqueous solution from molecular dynamics simulation.

Authors:  S Sen; L Nilsson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Intermolecular interactions and water structure in a condensed phase B-DNA crystal.

Authors:  G R Clark; C J Squire; L J Baker; R F Martin; J White
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

3.  Significance of ligand tails for interaction with the minor groove of B-DNA.

Authors:  B Wellenzohn; W Flader; R H Winger; A Hallbrucker; E Mayer; K R Liedl
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

Review 4.  DNA structure from A to B.

Authors:  R E Dickerson; H L Ng
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-19       Impact factor: 11.205

5.  Hidden Markov models from molecular dynamics simulations on DNA.

Authors:  Kelly M Thayer; D L Beveridge
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-18       Impact factor: 11.205

6.  Accurate representation of B-DNA double helical structure with implicit solvent and counterions.

Authors:  Lihua Wang; Brian E Hingerty; A R Srinivasan; Wilma K Olson; Suse Broyde
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

7.  The crystal structure of a 26-nucleotide RNA containing a hook-turn.

Authors:  Szilvia Szép; Jimin Wang; Peter B Moore
Journal:  RNA       Date:  2003-01       Impact factor: 4.942

8.  Rotational diffusion tensor of nucleic acids from 13C NMR relaxation.

Authors:  Jerome Boisbouvier; Zhengrong Wu; Arika Ono; Masatsune Kainosho; Ad Bax
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

9.  Probing the conformations of eight cloned DNA dodecamers; CGCGAATTCGCG, CGCGTTAACGCG, CGCGTATACGCG, CGCGATATCGCG, CGCAAATTTGCG, CGCTTTAAAGCG, CGCGGATCCGCG and CGCGGTACCGCG.

Authors:  K R Fox
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

10.  Effect of a neutralized phosphate backbone on the minor groove of B-DNA: molecular dynamics simulation studies.

Authors:  Donald Hamelberg; Loren Dean Williams; W David Wilson
Journal:  Nucleic Acids Res       Date:  2002-08-15       Impact factor: 16.971

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