Literature DB >> 1067594

A possible conformation for double-stranded polynucleotides.

G A Rodley, R S Scobie, R H Bates, R M Lewitt.   

Abstract

A model is presented for double-stranded polynucleotides which involves side-by-side meshing of the two strands rather than double helical intertwining. The sugar-phosphate backbone has a twisted strip-like character, yet base-pairing of the Watson-Crick type is still possible. Structural features of the basic model are described and coordinates are presented for a representative example. The structure has, on the whole, reasonable sterochemical contacts, and can be shown to produce a fiber diffraction pattern with x-rays not unlike that of the B form of DNA.

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Year:  1976        PMID: 1067594      PMCID: PMC430891          DOI: 10.1073/pnas.73.9.2959

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

1.  Kinky helix.

Authors:  F H Crick; A Klug
Journal:  Nature       Date:  1975-06-12       Impact factor: 49.962

2.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

3.  Polymorphism of a synthetic DNA in solution.

Authors:  F M Pohl
Journal:  Nature       Date:  1976-03-25       Impact factor: 49.962

4.  An uncommon nucleotide conformation shown by molecular structure of deoxyuridine-5'-phosphate and nucleic acid stereochemistry.

Authors:  M A Viswamitra; T P Seshadri; M L Post
Journal:  Nature       Date:  1975-12-11       Impact factor: 49.962

5.  Structural details of double-helix observed for DNAs containing alternating purine and pyrimidine sequences.

Authors:  S Arnott; R Chandrasekaran; D W Hukins; P J Smith; L Watts
Journal:  J Mol Biol       Date:  1974-09-15       Impact factor: 5.469

6.  Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC).

Authors:  F M Pohl; T M Jovin
Journal:  J Mol Biol       Date:  1972-06-28       Impact factor: 5.469

7.  Conformational studies on pyrimidine 5'-monophosphates and 3',5'-diphosphates. Effect of the phosphate groups on the backbone conformation of polynucleotides.

Authors:  N Yathindra; M Sundaralingam
Journal:  Biopolymers       Date:  1973       Impact factor: 2.505

8.  Ethidium bromide as a cooperative effector of a DNA structure.

Authors:  F M Pohl; T M Jovin; W Baehr; J J Holbrook
Journal:  Proc Natl Acad Sci U S A       Date:  1972-12       Impact factor: 11.205

  8 in total
  15 in total

1.  DNA duplex with the potential to change handedness after every half a turn.

Authors:  S K Brahmachari; R K Mishra; R Bagga; N Ramesh
Journal:  Nucleic Acids Res       Date:  1989-09-25       Impact factor: 16.971

2.  Unlinked strands as a topological constraint on chromosomal DNA, plasmid integration, and DNA repair.

Authors:  H J Bremermann
Journal:  J Math Biol       Date:  1979-12       Impact factor: 2.259

3.  Helical repeat of DNA in solution.

Authors:  J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1979-01       Impact factor: 11.205

4.  Topological considerations in the theory of replication of DNA.

Authors:  W F Pohl; G W Roberts
Journal:  J Math Biol       Date:  1978-10-25       Impact factor: 2.259

5.  Conformations of A-DNA and B-DNA in agreement with fiber X-ray and infrared dichroism.

Authors:  S Premilat; G Albiser
Journal:  Nucleic Acids Res       Date:  1983-03-25       Impact factor: 16.971

6.  Stereochemical details of the side-by-side model for DNA.

Authors:  R P Millane; G A Rodley
Journal:  Nucleic Acids Res       Date:  1981-04-10       Impact factor: 16.971

7.  Electron diffraction from single crystals of DNA.

Authors:  K H Downing; R M Glaeser
Journal:  Biophys J       Date:  1980-11       Impact factor: 4.033

8.  The early melting of closed duplex DNA: analysis by banding in buoyant neutral rubidium trichloroacetate.

Authors:  R L Burke; W R Bauer
Journal:  Nucleic Acids Res       Date:  1980-03-11       Impact factor: 16.971

9.  Interferon induction: a conformational hypothesis.

Authors:  D L Miles; D W Miles; H Eyring
Journal:  Proc Natl Acad Sci U S A       Date:  1979-03       Impact factor: 11.205

Review 10.  DNA supercoiling helps to unlink sister duplexes after replication.

Authors:  Alexander Vologodskii
Journal:  Bioessays       Date:  2010-01       Impact factor: 4.345

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