Literature DB >> 2115929

What causes the aphid 28S rRNA to lack the hidden break?

K Ogino1, H Eda-Fujiwara, H Fujiwara, H Ishikawa.   

Abstract

In order to determine why the aphid 28S rRNA lacks the hidden break otherwise found in insects, the structure of the region of the aphid ribosomal DNA (rDNA) corresponding to the gap region, which in other insect rDNA transcripts is excised posttranscriptionally, was studied. Sequence comparison suggested that, in contradistinction to what is found in rDNA transcripts of other insects, a stem-loop structure formed in this region of the aphid rDNA transcript is not AU-rich. Nor did the loop of the aphid molecule contain the UAAU tract that can be a signal for the introduction of the hidden break, suggesting that in this particular region the aphid 28S rRNA resembles 28S rRNAs of deuterostomes, which do not contain the hidden break.

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Year:  1990        PMID： 2115929     DOI： 10.1007/bf02101106

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  15 in total

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Journal:  Nucleic Acids Res       Date:  1988       Impact factor: 16.971

2.  Studies of the thermal conversion of 28 S RNA of Galleria mellonella (L.) to an 18 S product.

Authors:  H Ishikawa; R W Newburgh
Journal:  J Mol Biol       Date:  1972-02-28       Impact factor: 5.469

3.  Dideoxy sequencing method using denatured plasmid templates.

Authors:  M Hattori; Y Sakaki
Journal:  Anal Biochem       Date:  1986-02-01       Impact factor: 3.365

4.  Xenopus laevis 28S ribosomal RNA: a secondary structure model and its evolutionary and functional implications.

Authors:  C G Clark; B W Tague; V C Ware; S A Gerbi
Journal:  Nucleic Acids Res       Date:  1984-08-10       Impact factor: 16.971

5.  Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.

Authors:  S Henikoff
Journal:  Gene       Date:  1984-06       Impact factor: 3.688

6.  [Sequence of the central break region of the precursor of Drosophila 26S ribosomal RNA].

Authors:  G Delanversin; B Jacq
Journal:  C R Seances Acad Sci III       Date:  1983

Review 7.  Evolution of ribosomal RNA.

Authors:  H Ishikawa
Journal:  Comp Biochem Physiol B       Date:  1977

8.  Primary and secondary structures of Tetrahymena and aphid 5.8S rRNAs: structural features of 5.8S rRNA which interacts with the 28S rRNA containing the hidden break.

Authors:  H Fujiwara; H Ishikawa
Journal:  Nucleic Acids Res       Date:  1982-09-11       Impact factor: 16.971

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis.

Authors:  V C Ware; B W Tague; C G Clark; R L Gourse; R C Brand; S A Gerbi
Journal:  Nucleic Acids Res       Date:  1983-11-25       Impact factor: 16.971
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  9 in total

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Journal:  J Mol Evol       Date:  2005-07-14       Impact factor: 2.395

2.  Nucleotide sequence and presumed secondary structure of the 28S rRNA of pea aphid: implication for diversification of insect rRNA.

Authors:  D Amako; O Y Kwon; H Ishikawa
Journal:  J Mol Evol       Date:  1996-11       Impact factor: 2.395

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Authors:  K M Caradoc-Davies; S Graves; D R O'Reilly; O P Evans; V K Ward
Journal:  Virus Genes       Date:  2001-06       Impact factor: 2.332

4.  Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements.

Authors:  J J Gillespie; J S Johnston; J J Cannone; R R Gutell
Journal:  Insect Mol Biol       Date:  2006-10       Impact factor: 3.585

5.  Identification of an Alternative rRNA Post-transcriptional Maturation of 26S rRNA in the Kingdom Fungi.

Authors:  Alfonso Navarro-Ródenas; Andrea Carra; Asunción Morte
Journal:  Front Microbiol       Date:  2018-05-25       Impact factor: 5.640

6.  RNA profile diversity across arthropoda: guidelines, methodological artifacts, and expected outcomes.

Authors:  Danielle M DeLeo; Jorge L Pérez-Moreno; Hernán Vázquez-Miranda; Heather D Bracken-Grissom
Journal:  Biol Methods Protoc       Date:  2018-12-15

7.  'Degraded' RNA profiles in Arthropoda and beyond.

Authors:  Sean D McCarthy; Michel M Dugon; Anne Marie Power
Journal:  PeerJ       Date:  2015-12-01       Impact factor: 2.984

8.  Insects' RNA Profiling Reveals Absence of "Hidden Break" in 28S Ribosomal RNA Molecule of Onion Thrips, Thrips tabaci.

Authors:  Rosaline Wanjiru Macharia; Fidelis Levi Ombura; Erick Onyango Aroko
Journal:  J Nucleic Acids       Date:  2015-02-12

9.  Computational discovery of hidden breaks in 28S ribosomal RNAs across eukaryotes and consequences for RNA Integrity Numbers.

Authors:  Paschalis Natsidis; Philipp H Schiffer; Irepan Salvador-Martínez; Maximilian J Telford
Journal:  Sci Rep       Date:  2019-12-20       Impact factor: 4.379
  9 in total

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