Literature DB >> 6626675

Evaluation and propagation of confidence intervals in nonlinear, asymmetrical variance spaces. Analysis of ligand-binding data.

M L Johnson.   

Abstract

Two problems that are often overlooked in studies employing nonlinear least-squares techniques for parameter estimation are confidence-interval estimation and propagation. When the parameters are correlated, the variance space and consequently the confidence intervals are nonlinear and asymmetrical. The presented mathematical method for the evaluation of confidence intervals and error propagation addresses these problems. The examples employed to demonstrate these methods include linear least-squares and the nonlinear least-squares analysis of ligand-binding problems, such as hormone receptor interactions and oxygen binding to human hemoglobin. The mathematical procedures have proven very useful for analyzing the molecular mechanism of cooperativity in human hemoglobin (Johnson, M. L., and G. K. Ackers, 1982. Biochemistry 21:201-211).

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Year:  1983        PMID: 6626675      PMCID: PMC1434811          DOI: 10.1016/S0006-3495(83)84281-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  12 in total

1.  Energetics of oxygenation-linked subunit interactions in human hemoglobin.

Authors:  G K Ackers; M L Johnson; F C Mills; S H IP
Journal:  Biochem Biophys Res Commun       Date:  1976-03-08       Impact factor: 3.575

2.  The linkage between oxygenation and subunit dissociation in human hemoglobin. Consequences for the analysis of oxygenation curves.

Authors:  G K Ackers; M L Johnson; F C Mills; H R Halvorson; S Shapiro
Journal:  Biochemistry       Date:  1975-11-18       Impact factor: 3.162

3.  Oxygenation-linked subunit interactions in human hemoglobin: experimental studies on the concentration dependence of oxygenation curves.

Authors:  F C Mills; M L Johnson; G K Ackers
Journal:  Biochemistry       Date:  1976-11-30       Impact factor: 3.162

4.  Oxygenation-linked subunit interactions in human hemoglobin: analysis of linkage functions for constituent energy terms.

Authors:  M L Johnson; H R Halvorson; G K Ackers
Journal:  Biochemistry       Date:  1976-11-30       Impact factor: 3.162

5.  Resolvability of Adair constants from oxygenation curves measured at low hemoglobin concentration.

Authors:  M L Johnson; G K Ackers
Journal:  Biophys Chem       Date:  1977-06       Impact factor: 2.352

6.  The linkage between oxygenation and subunit dissociation in human hemoglobin.

Authors:  G K Ackers; H R Halvorson
Journal:  Proc Natl Acad Sci U S A       Date:  1974-11       Impact factor: 11.205

7.  Some problems of estimating macromolecule-ligand binding parameters.

Authors:  L Endrenyi; F H Kwong
Journal:  Acta Biol Med Ger       Date:  1973

8.  Linked functions in allosteric proteins. Extension of the concerted (MWC) model for ligand-linked subunit assembly and its application to human hemoglobins.

Authors:  G K Ackers; M L Johnson
Journal:  J Mol Biol       Date:  1981-04-25       Impact factor: 5.469

9.  The linkage between oxygenation and subunit association in human hemoglobin Kansas. Concentration dependence of the oxygen binding equilibria.

Authors:  D H Atha; M L Johnson; A F Riggs
Journal:  J Biol Chem       Date:  1979-12-25       Impact factor: 5.157

10.  Kinetics of deoxyhemoglobin subunit dissociation determined by haptoglobin binding: estimation of the equilibrium constant from forward and reverse rates.

Authors:  S H Ip; M L Johnson; G K Ackers
Journal:  Biochemistry       Date:  1976-02-10       Impact factor: 3.162

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  31 in total

1.  On the origin of the enthalpy and entropy convergence temperatures in protein folding.

Authors:  L Fu; E Freire
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-01       Impact factor: 11.205

2.  Nonlinear analyte concentration gradients for one-step kinetic analysis employing optical microring resonators.

Authors:  Michael T Marty; Courtney D Kuhnline Sloan; Ryan C Bailey; Stephen G Sligar
Journal:  Anal Chem       Date:  2012-06-22       Impact factor: 6.986

3.  Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. II. "Composition-space" refinement method.

Authors:  M C Wiener; S H White
Journal:  Biophys J       Date:  1991-01       Impact factor: 4.033

4.  Distance distributions and anisotropy decays of troponin C and its complex with troponin I.

Authors:  H C Cheung; C K Wang; I Gryczynski; W Wiczk; G Laczko; M L Johnson; J R Lakowicz
Journal:  Biochemistry       Date:  1991-05-28       Impact factor: 3.162

5.  Global analysis of steady-state energy transfer measurements in membranes: resolution of structural and binding parameters.

Authors:  Yegor A Domanov; Galina P Gorbenko; Julian G Molotkovsky
Journal:  J Fluoresc       Date:  2004-01       Impact factor: 2.217

6.  Determination of the antenna heterogeneity of Photosystem II by direct simultaneous fitting of several fluorescence rise curves measured with DCMU at different light intensities.

Authors:  D Lazár; P Tomek; P Ilík; J Naus
Journal:  Photosynth Res       Date:  2001       Impact factor: 3.573

7.  Anisotropy decays of single tryptophan proteins measured by GHz frequency-domain fluorometry with collisional quenching.

Authors:  J R Lakowicz; I Gryczynski; H Szmacinski; H Cherek; N Joshi
Journal:  Eur Biophys J       Date:  1991       Impact factor: 1.733

8.  Global target analysis of picosecond chlorophyll fluorescence kinetics from pea chloroplasts: A new approach to the characterization of the primary processes in photosystem II alpha- and beta-units.

Authors:  T A Roelofs; C H Lee; A R Holzwarth
Journal:  Biophys J       Date:  1992-05       Impact factor: 4.033

9.  Review of fluorescence anisotropy decay analysis by frequency-domain fluorescence spectroscopy.

Authors:  J R Lakowicz; H Cherek; J Kuśba; I Gryczynski; M L Johnson
Journal:  J Fluoresc       Date:  1993-06       Impact factor: 2.217

10.  In vitro control analysis of an enzyme system: experimental and analytical developments.

Authors:  H M Sauro; J Barrett
Journal:  Mol Cell Biochem       Date:  1995-04-26       Impact factor: 3.396

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