Literature DB >> 6574846

Computer simulation of DNA double-helix dynamics.

M Levitt.   

Abstract

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Year:  1983        PMID： 6574846     DOI： 10.1101/sqb.1983.047.01.030

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN： 0091-7451


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  30 in total

1.  Local sequential minimization of double stranded B-DNA using Monte Carlo annealing.

Authors:  Konstantinos Sfyrakis; Astero Provata; David C Povey; Brendan J Howlin
Journal:  J Mol Model       Date:  2004-03-24       Impact factor: 1.810

2.  DNA dynamically directs its own transcription initiation.

Authors:  Chu H Choi; George Kalosakas; Kim O Rasmussen; Makoto Hiromura; Alan R Bishop; Anny Usheva
Journal:  Nucleic Acids Res       Date:  2004-03-05       Impact factor: 16.971

3.  Evaluation of DNA Force Fields in Implicit Solvation.

Authors:  Thomas Gaillard; David A Case
Journal:  J Chem Theory Comput       Date:  2011-10-11       Impact factor: 6.006

4.  Analysis of a DNA simulation model through hairpin melting experiments.

Authors:  Margaret C Linak; Kevin D Dorfman
Journal:  J Chem Phys       Date:  2010-09-28       Impact factor: 3.488

5.  Computer simulation study of molecular recognition in model DNA microarrays.

Authors:  Arthi Jayaraman; Carol K Hall; Jan Genzer
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

6.  Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers.

Authors:  Alberto Pérez; Iván Marchán; Daniel Svozil; Jiri Sponer; Thomas E Cheatham; Charles A Laughton; Modesto Orozco
Journal:  Biophys J       Date:  2007-03-09       Impact factor: 4.033

7.  Dynamic DNA underpins chromosome dynamics.

Authors:  Andrew Travers
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

8.  Profiling the thermodynamic softness of adenoviral promoters.

Authors:  Chu H Choi; Zoi Rapti; Vladimir Gelev; Michele R Hacker; Boian Alexandrov; Evelyn J Park; Jae Suk Park; Nobuo Horikoshi; Augusto Smerzi; Kim Ø Rasmussen; Alan R Bishop; Anny Usheva
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

9.  Molecular modeling of nucleic acid structure: electrostatics and solvation.

Authors:  T E Cheatham; B R Brooks; P A Kollman
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2001-08

10.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06
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