Literature DB >> 24268134

Dynamic DNA underpins chromosome dynamics.

Andrew Travers1.   

Abstract

A recent article by Meyer and co-workers provides a detailed description of the dynamics of base-step conformational transitions and of the first steps to the basepair opening. These results underpin the essential role that DNA dynamics place in the DNA structural transitions that accompany the active processes of transcription, replication, and recombination in bacterial and eukaryotic chromatin.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID： 24268134      PMCID： PMC3838753          DOI： 10.1016/j.bpj.2013.10.011

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


  23 in total

1.  Localized single-stranded bubble mechanism for cyclization of short double helix DNA.

Authors:  Jie Yan; John F Marko
Journal:  Phys Rev Lett       Date:  2004-09-03       Impact factor: 9.161

2.  Supercoiling of the DNA template during transcription.

Authors:  L F Liu; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

3.  Calibration of DNA curvature and a unified description of sequence-directed bending.

Authors:  H S Koo; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

4.  Sequence periodicities in chicken nucleosome core DNA.

Authors:  S C Satchwell; H R Drew; A A Travers
Journal:  J Mol Biol       Date:  1986-10-20       Impact factor: 5.469

5.  Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature.

Authors:  J L Leroy; E Charretier; M Kochoyan; M Guéron
Journal:  Biochemistry       Date:  1988-12-13       Impact factor: 3.162

6.  Sequence specificity of curved DNA.

Authors:  S Diekmann
Journal:  FEBS Lett       Date:  1986-01-20       Impact factor: 4.124

7.  Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature.

Authors:  E Goldstein; K Drlica
Journal:  Proc Natl Acad Sci U S A       Date:  1984-07       Impact factor: 11.205

8.  Reverse gyrase--a topoisomerase which introduces positive superhelical turns into DNA.

Authors:  A Kikuchi; K Asai
Journal:  Nature       Date:  1984 Jun 21-27       Impact factor: 49.962

9.  Computer simulation of DNA double-helix dynamics.

Authors:  M Levitt
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

10.  DNA basepair step deformability inferred from molecular dynamics simulations.

Authors:  Filip Lankas; Jirí Sponer; Jörg Langowski; Thomas E Cheatham
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033
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  3 in total

1.  DNA, flexibly flexible.

Authors:  Jason D Kahn
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

2.  The role of structural parameters in DNA cyclization.

Authors:  Ludmil B Alexandrov; Alan R Bishop; Kim Ø Rasmussen; Boian S Alexandrov
Journal:  BMC Bioinformatics       Date:  2016-02-04       Impact factor: 3.169

3.  Effect of temperature on the intrinsic flexibility of DNA and its interaction with architectural proteins.

Authors:  Rosalie P C Driessen; Gerrit Sitters; Niels Laurens; Geri F Moolenaar; Gijs J L Wuite; Nora Goosen; Remus Th Dame
Journal:  Biochemistry       Date:  2014-10-07       Impact factor: 3.162
  3 in total

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