Literature DB >> 6571217

A prevalent persistent global nonrandomness that distinguishes coding and non-coding eucaryotic nuclear DNA sequences.

B E Blaisdell.   

Abstract

Coding sequences of eucaryotic nuclear DNA were characterized by an excess of short runs and a deficit of long runs of weak and of strong hydrogen bounding bases; non-coding sequences by a deficit of short runs and an excess of long runs, in the same of purines and of pyrimidines. The conservation of these attributes across DNA sequences coding for proteins of widely different function, across widely different eucaryotic species for the same protein and across related genes that diverged a long time ago and that now show large differences in base and, if coding, amino acid sequence suggested that these attributes have survival value. It was concluded that these attributes constitute probalistic constraints on the primary structure (base sequence) of both coding and non-coding DNA.

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Year:  1983        PMID: 6571217     DOI: 10.1007/bf02300750

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  59 in total

1.  A single mouse alpha-amylase gene specifies two different tissue-specific mRNAs.

Authors:  R A Young; O Hagenbüchle; U Schibler
Journal:  Cell       Date:  1981-02       Impact factor: 41.582

2.  The complete sequence of a chromosomal mouse alpha--globin gene reveals elements conserved throughout vertebrate evolution.

Authors:  Y Nishioka; P Leder
Journal:  Cell       Date:  1979-11       Impact factor: 41.582

3.  Molecular structure of a left-handed double helical DNA fragment at atomic resolution.

Authors:  A H Wang; G J Quigley; F J Kolpak; J L Crawford; J H van Boom; G van der Marel; A Rich
Journal:  Nature       Date:  1979-12-13       Impact factor: 49.962

4.  Structure of the rat prolactin gene.

Authors:  E J Gubbins; R A Maurer; M Lagrimini; C R Erwin; J E Donelson
Journal:  J Biol Chem       Date:  1980-09-25       Impact factor: 5.157

5.  The structure and evolution of the human beta-globin gene family.

Authors:  A Efstratiadis; J W Posakony; T Maniatis; R M Lawn; C O'Connell; R A Spritz; J K DeRiel; B G Forget; S M Weissman; J L Slightom; A E Blechl; O Smithies; F E Baralle; C C Shoulders; N J Proudfoot
Journal:  Cell       Date:  1980-10       Impact factor: 41.582

6.  Are snRNPs involved in splicing?

Authors:  M R Lerner; J A Boyle; S M Mount; S L Wolin; J A Steitz
Journal:  Nature       Date:  1980-01-10       Impact factor: 49.962

7.  Complete nucleotide sequence of the human delta-globin gene.

Authors:  R A Spritz; J K DeRiel; B G Forget; S M Weissman
Journal:  Cell       Date:  1980-10       Impact factor: 41.582

8.  Crystal structure analysis of a complete turn of B-DNA.

Authors:  R Wing; H Drew; T Takano; C Broka; S Tanaka; K Itakura; R E Dickerson
Journal:  Nature       Date:  1980-10-23       Impact factor: 49.962

9.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

Authors:  M Eigen; P Schuster
Journal:  Naturwissenschaften       Date:  1977-11

10.  Human fibroblast interferon gene lacks introns.

Authors:  R M Lawn; J Adelman; A E Franke; C M Houck; M Gross; R Najarian; D V Goeddel
Journal:  Nucleic Acids Res       Date:  1981-03-11       Impact factor: 16.971

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  11 in total

Review 1.  Assessment of protein coding measures.

Authors:  J W Fickett; C S Tung
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

2.  Persistence of repeated sequences that evolve by replication slippage.

Authors:  H Tachida; M Iizuka
Journal:  Genetics       Date:  1992-06       Impact factor: 4.562

3.  Compressing proteomes: the relevance of medium range correlations.

Authors:  Dario Benedetto; Emanuele Caglioti; Claudia Chica
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

4.  A comprehensive package for DNA sequence analysis in FORTRAN IV for the PDP-11.

Authors:  J Arnold; V K Eckenrode; K Lemke; G J Phillips; S W Schaeffer
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

5.  Effectiveness of measures requiring and not requiring prior sequence alignment for estimating the dissimilarity of natural sequences.

Authors:  B E Blaisdell
Journal:  J Mol Evol       Date:  1989-12       Impact factor: 2.395

Review 6.  The multiple codes of nucleotide sequences.

Authors:  E N Trifonov
Journal:  Bull Math Biol       Date:  1989       Impact factor: 1.758

7.  DNA sequence patterns in human, mouse, and rabbit immunoglobulin kappa-genes.

Authors:  S Karlin; G Ghandour
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

8.  Strong doublet preferences in nucleotide sequences and DNA geometry.

Authors:  R Nussinov
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

9.  Choice of base at silent codon site 3 is not selectively neutral in eucaryotic structural genes: it maintains excess short runs of weak and strong hydrogen bonding bases.

Authors:  B E Blaisdell
Journal:  J Mol Evol       Date:  1983       Impact factor: 2.395

10.  The generation of Mutator transposable element subfamilies in maize.

Authors:  J L Bennetzen; P S Springer
Journal:  Theor Appl Genet       Date:  1994-01       Impact factor: 5.699

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