Literature DB >> 24227085

Diffusion-enhanced resonance energy transfer shows that linker-DNA accessibility decreases during salt-induced chromatin condensation.

R Labarbe1, S Mignon, S Flock, C Houssier.   

Abstract

Accessibility of linker-DNA chromatin during salt-induced condensation of chicken erythrocytes chromatin was studied by diffusion-enhanced resonance energy transfer. A terbium complex was covalently bound to linker-DNA and fluorescein molecules bound to latex particles with diameters ranging from 14 to 2470 nm were used as acceptor. The accessibility of linker-DNA to molecules with a diameter superior to 14 nm diminished during condensation, but for an acceptor diameter of 14 nm or less, no accessibility variation was observed. It can be concluded that (1) linker-DNA is located inside the fiber when chromatin is in the condensed state, (2) chromatin condensation can prevent the approach to DNA due to steric hindrance, (3) salt-induced chromatin condensation is a gradual process, and (4) condensed chromatin models containing a central cavity are more likely.

Entities:  

Year:  1996        PMID: 24227085     DOI: 10.1007/BF00732050

Source DB:  PubMed          Journal:  J Fluoresc        ISSN: 1053-0509            Impact factor:   2.217


  32 in total

Review 1.  Psoralens as photoactive probes of nucleic acid structure and function: organic chemistry, photochemistry, and biochemistry.

Authors:  G D Cimino; H B Gamper; S T Isaacs; J E Hearst
Journal:  Annu Rev Biochem       Date:  1985       Impact factor: 23.643

2.  Site specificity of psoralen-DNA interstrand cross-linking determined by nuclease Bal31 digestion.

Authors:  W P Zhen; O Buchardt; H Nielsen; P E Nielsen
Journal:  Biochemistry       Date:  1986-10-21       Impact factor: 3.162

3.  Sensitive non-radioactive dot-blot hybridization using DNA probes labelled with chelate group substituted psoralen and quantitative detection by europium ion fluorescence.

Authors:  A Oser; W K Roth; G Valet
Journal:  Nucleic Acids Res       Date:  1988-02-11       Impact factor: 16.971

4.  Fluorescence resonance energy transfer.

Authors:  P R Selvin
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

5.  Action of micrococcal nuclease on chromatin and the location of histone H1.

Authors:  M Noll; R D Kornberg
Journal:  J Mol Biol       Date:  1977-01-25       Impact factor: 5.469

6.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

7.  Study of DNA accessibility in the condensed chromatin structures by resonance energy transfer.

Authors:  R Labarbe; S Flock; P Colson; C Houssier
Journal:  J Fluoresc       Date:  1994-12       Impact factor: 2.217

8.  Diffusion-enhanced lanthanide energy-transfer study of DNA-bound cobalt(III) bleomycins: comparisons of accessibility and electrostatic potential with DNA complexes of ethidium and acridine orange.

Authors:  T G Wensel; C H Chang; C F Meares
Journal:  Biochemistry       Date:  1985-06-04       Impact factor: 3.162

9.  Comparative study of the condensation of chicken erythrocyte and calf thymus chromatins by di- and multivalent cations.

Authors:  R Marquet; P Colson; A M Matton; C Houssier; M Thiry; G Goessens
Journal:  J Biomol Struct Dyn       Date:  1988-02

10.  A defined structure of the 30 nm chromatin fibre which accommodates different nucleosomal repeat lengths.

Authors:  P J Butler
Journal:  EMBO J       Date:  1984-11       Impact factor: 11.598

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  1 in total

1.  DNA of a circular minichromosome linearized by restriction enzymes or other reagents is resistant to further cleavage: an influence of chromatin topology on the accessibility of DNA.

Authors:  Sławomir Kumala; Yasmina Hadj-Sahraoui; Joanna Rzeszowska-Wolny; Ronald Hancock
Journal:  Nucleic Acids Res       Date:  2012-07-30       Impact factor: 16.971

  1 in total

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