Literature DB >> 6498164

Reinvestigation of the structure of oxidized and reduced flavin: carbon-13 and nitrogen-15 nuclear magnetic resonance study.

C T Moonen, J Vervoort, F Müller.   

Abstract

Several chemically substituted flavins are investigated in the oxidized and the reduced state by 13C and 15N NMR techniques. The dependence on the polarity of the solvent and on the concentration is studied. In combination with already published results, a semiempirical theory is developed to interpret the chemical shifts in terms of the solution structure of flavins. Where possible, the results are compared with crystallographic and light absorption data. In contrast to common ideas, the solution structure of the oxidized state is not fully coplanar, but the N(10) atom is situated out of plane to a certain degree. Polarizing the flavin by hydrogen bonds in a high dielectric medium moves the N(10) atom into the molecular plane, and the flavin molecule becomes coplanar. In the coplanar molecule, pi electrons are delocalized from the N(10) atom mainly to O(2 alpha) and O(4 alpha). The NMR results show that the solution structure of reduced flavin is mainly governed by sterical hindrance and hydrogen bonds. The findings are in contrast to commonly accepted ideas that reduced flavin is strongly bent. In an apolar solvent, the reduced neutral isoalloxazine is only slightly bent. The formation of hydrogen bonds in a protic solvent of a high dielectric constant decreases the bend. The N(10) atom is now almost fully sp2 hybridized, and the N(5) atom has an endocyclic angle of 115-117 degrees, indicating its predominant sp2 character. The results have several important implications for flavin catalysis.(ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1984        PMID: 6498164     DOI: 10.1021/bi00316a007

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Crystal structure of reduced thioredoxin reductase from Escherichia coli: structural flexibility in the isoalloxazine ring of the flavin adenine dinucleotide cofactor.

Authors:  B W Lennon; C H Williams; M L Ludwig
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

2.  15N solid-state NMR provides a sensitive probe of oxidized flavin reactive sites.

Authors:  Ronald L Koder; Joseph D Walsh; Maxim S Pometun; P Leslie Dutton; Richard J Wittebort; Anne-Frances Miller
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

3.  Crystal structures of nitroalkane oxidase: insights into the reaction mechanism from a covalent complex of the flavoenzyme trapped during turnover.

Authors:  Akanksha Nagpal; Michael P Valley; Paul F Fitzpatrick; Allen M Orville
Journal:  Biochemistry       Date:  2006-01-31       Impact factor: 3.162

4.  Preparation of modified long-mer RNAs and analysis of FMN binding to the ypaA aptamer from B. subtilis.

Authors:  Jennifer Frommer; Robert Hieronymus; Tamil Selvi Arunachalam; Sabine Heeren; Maria Jenckel; Anne Strahl; Bettina Appel; Sabine Müller
Journal:  RNA Biol       Date:  2014-03-26       Impact factor: 4.652

5.  15N solid-state NMR as a probe of flavin H-bonding.

Authors:  Dongtao Cui; Ronald L Koder; P Leslie Dutton; Anne-Frances Miller
Journal:  J Phys Chem B       Date:  2011-05-27       Impact factor: 2.991

6.  A pentacyclic reaction intermediate of riboflavin synthase.

Authors:  B Illarionov; W Eisenreich; A Bacher
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-12       Impact factor: 11.205

Review 7.  The type II isopentenyl Diphosphate:Dimethylallyl diphosphate isomerase (IDI-2): A model for acid/base chemistry in flavoenzyme catalysis.

Authors:  Christopher J Thibodeaux; Hung-Wen Liu
Journal:  Arch Biochem Biophys       Date:  2017-05-31       Impact factor: 4.013

8.  An optomechanical transducer in the blue light receptor phototropin from Avena sativa.

Authors:  M Salomon; W Eisenreich; H Dürr; E Schleicher; E Knieb; V Massey; W Rüdiger; F Müller; A Bacher; G Richter
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-16       Impact factor: 11.205

9.  Ultrafast dynamics of flavins in five redox states.

Authors:  Ya-Ting Kao; Chaitanya Saxena; Ting-Fang He; Lijun Guo; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  J Am Chem Soc       Date:  2008-09-04       Impact factor: 15.419

10.  Functional characterization of the re-face loop spanning residues 536-541 and its interactions with the cofactor in the flavin mononucleotide-binding domain of flavocytochrome P450 from Bacillus megaterium.

Authors:  Mumtaz Kasim; Huai-Chun Chen; Richard P Swenson
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

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