Literature DB >> 6477889

On the origin of the lactate dehydrogenase induced rate effect.

J W Burgner, W J Ray.   

Abstract

To evaluate the ability of lactate dehydrogenase to facilitate the bond making/breaking steps for both the addition of pyruvate enol to NAD (pyruvate adduct reaction) and the normal redox reaction, the ability of the enzyme to facilitate the tautomerization of bound pyruvate is assessed. In addition, the equilibrium constants for the adduct reaction are obtained for both bound and free reactants from the ratio of the rate constants in the forward and reverse reactions (at pH 7). The latter comparison indicates that the enzyme facilitates bond making/breaking in the (forward) pyruvate adduct reaction by a factor of about 10(11) M. Similar comparisons suggest that reactant immobilization accounts for about 1000 M of this 10(11) M rate effect. Since the (pH-independent) rate constant for the ketonization of bound pyruvate enol assisted by the external buffer, imidazolium ion, is 2 X 10(7) M-1 s-1 and the corresponding rate constant for free pyruvate enol, again assisted by imidazolium ion, is 35 M-1 s-1 [Burger, J. W., II, & Ray, W. J., Jr. (1978) Biochemistry 17, 1664], the enzyme facilitates the bond making/breaking steps associated with the conversion of bound HO-C less than to bound O = C less than by a factor of about 10(6)-fold. The product of the above two rate enhancement factors and the rate factor suggested previously for the environmental effect on NAD produced by its binding to lactate dehydrogenase, 100-fold, is 10(11) M, and it accounts for the bond making/breaking effects exerted by the enzyme in the pyruvate adduct reaction. The rate constant for oxidation of ethanol (a model for lactate) by 1-methylnicotinamide (a model for NAD) is about 5 X 10(-12) M-1 s-1 at 25 degrees C in pure ethanol (delta H for this reaction is about 30 kcal/mol). The ratio of the rate constants for E X NAD X Lac----E X NADH X Pyr and the above model reaction is estimated as about 10(14) M in water; i.e., the LDH-induced rate effect is about 10(14) M. The product of the values for the above rate factors for the normal redox reaction is about 10(12) M. Although the value of this product is less certain than that for the adduct reaction, these rate factors do account for much of the LDH-induced rate effect.

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Year:  1984        PMID: 6477889     DOI: 10.1021/bi00311a010

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

1.  Structural transformations in the dynamics of Michaelis complex formation in lactate dehydrogenase.

Authors:  Sebastian McClendon; Dung M Vu; Keith Clinch; Robert Callender; R Brian Dyer
Journal:  Biophys J       Date:  2005-05-06       Impact factor: 4.033

2.  The approach to the Michaelis complex in lactate dehydrogenase: the substrate binding pathway.

Authors:  Sebastian McClendon; Nick Zhadin; Robert Callender
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

3.  Lactate dehydrogenase undergoes a substantial structural change to bind its substrate.

Authors:  Linlin Qiu; Miriam Gulotta; Robert Callender
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

4.  Ligand binding and protein dynamics in lactate dehydrogenase.

Authors:  J R Exequiel T Pineda; Robert Callender; Steven D Schwartz
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

5.  On the pathway of forming enzymatically productive ligand-protein complexes in lactate dehydrogenase.

Authors:  Hua Deng; Scott Brewer; Dung M Vu; Keith Clinch; Robert Callender; R Brian Dyer
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

6.  Resolution of Submillisecond Kinetics of Multiple Reaction Pathways for Lactate Dehydrogenase.

Authors:  Michael J Reddish; Robert Callender; R Brian Dyer
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

Review 7.  Enzyme active site interactions by Raman/FTIR, NMR, and ab initio calculations.

Authors:  Hua Deng
Journal:  Adv Protein Chem Struct Biol       Date:  2013       Impact factor: 3.507

8.  Conformational heterogeneity within the Michaelis complex of lactate dehydrogenase.

Authors:  Hua Deng; Dung V Vu; Keith Clinch; Ruel Desamero; R Brian Dyer; Robert Callender
Journal:  J Phys Chem B       Date:  2011-05-13       Impact factor: 2.991

9.  Effect of Protein Isotope Labeling on the Catalytic Mechanism of Lactate Dehydrogenase.

Authors:  Tsuyoshi Egawa; Hua Deng; Eric Chang; Robert Callender
Journal:  J Phys Chem B       Date:  2019-11-06       Impact factor: 2.991

10.  Kinetic analysis of lactate dehydrogenase using integrated rate equations.

Authors:  L D Holmes; M R Schiller; E A Boeker
Journal:  Experientia       Date:  1993-10-15
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