Literature DB >> 15879476

Structural transformations in the dynamics of Michaelis complex formation in lactate dehydrogenase.

Sebastian McClendon1, Dung M Vu, Keith Clinch, Robert Callender, R Brian Dyer.   

Abstract

The dynamical nature of the binding of a substrate surrogate to lactate dehydrogenase is examined on the nanoseconds to milliseconds timescale by laser-induced temperature-jump relaxation spectroscopy. Fluorescence emission of the nicotinamide group of bound NADH is used to define the pathway and kinetics of substrate binding. Assignment of specific kinetic states and elucidation of their structures are accomplished using isotope edited infrared absorption spectroscopy. Such studies are poised to yield a detailed picture of the coupling of protein dynamics to function.

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Year:  2005        PMID: 15879476      PMCID: PMC1289277          DOI: 10.1529/biophysj.105.064675

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  5 in total

1.  Probing protein dynamics using temperature jump relaxation spectroscopy.

Authors:  Robert Callender; R Brian Dyer
Journal:  Curr Opin Struct Biol       Date:  2002-10       Impact factor: 6.809

2.  The approach to the Michaelis complex in lactate dehydrogenase: the substrate binding pathway.

Authors:  Sebastian McClendon; Nick Zhadin; Robert Callender
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

3.  Design and synthesis of new enzymes based on the lactate dehydrogenase framework.

Authors:  C R Dunn; H M Wilks; D J Halsall; T Atkinson; A R Clarke; H Muirhead; J J Holbrook
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1991-05-29       Impact factor: 6.237

4.  On the origin of the lactate dehydrogenase induced rate effect.

Authors:  J W Burgner; W J Ray
Journal:  Biochemistry       Date:  1984-07-31       Impact factor: 3.162

5.  Source of catalysis in the lactate dehydrogenase system. Ground-state interactions in the enzyme-substrate complex.

Authors:  H Deng; J Zheng; A Clarke; J J Holbrook; R Callender; J W Burgner
Journal:  Biochemistry       Date:  1994-03-01       Impact factor: 3.162

  5 in total
  18 in total

1.  The approach to the Michaelis complex in lactate dehydrogenase: the substrate binding pathway.

Authors:  Sebastian McClendon; Nick Zhadin; Robert Callender
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

2.  Lactate dehydrogenase undergoes a substantial structural change to bind its substrate.

Authors:  Linlin Qiu; Miriam Gulotta; Robert Callender
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

3.  Ligand binding and protein dynamics in lactate dehydrogenase.

Authors:  J R Exequiel T Pineda; Robert Callender; Steven D Schwartz
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

4.  On the pathway of forming enzymatically productive ligand-protein complexes in lactate dehydrogenase.

Authors:  Hua Deng; Scott Brewer; Dung M Vu; Keith Clinch; Robert Callender; R Brian Dyer
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

5.  The cis conformation of proline leads to weaker binding of a p53 peptide to MDM2 compared to trans.

Authors:  Yingqian Ada Zhan; F Marty Ytreberg
Journal:  Arch Biochem Biophys       Date:  2015-04-01       Impact factor: 4.013

6.  Resolution of Submillisecond Kinetics of Multiple Reaction Pathways for Lactate Dehydrogenase.

Authors:  Michael J Reddish; Robert Callender; R Brian Dyer
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

7.  Conformational heterogeneity within the Michaelis complex of lactate dehydrogenase.

Authors:  Hua Deng; Dung V Vu; Keith Clinch; Ruel Desamero; R Brian Dyer; Robert Callender
Journal:  J Phys Chem B       Date:  2011-05-13       Impact factor: 2.991

8.  Large scale dynamics of the Michaelis complex in Bacillus stearothermophilus lactate dehydrogenase revealed by a single-tryptophan mutant study.

Authors:  Beining Nie; Hua Deng; Ruel Desamero; Robert Callender
Journal:  Biochemistry       Date:  2013-03-07       Impact factor: 3.162

9.  Changes in protein architecture and subpicosecond protein dynamics impact the reaction catalyzed by lactate dehydrogenase.

Authors:  Jean E Masterson; Steven D Schwartz
Journal:  J Phys Chem A       Date:  2013-03-12       Impact factor: 2.781

10.  Conformational Heterogeneity in the Michaelis Complex of Lactate Dehydrogenase: An Analysis of Vibrational Spectroscopy Using Markov and Hidden Markov Models.

Authors:  Xiaoliang Pan; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2016-07-05       Impact factor: 2.991

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