Literature DB >> 6362659

Identification of low-frequency modes in protein molecules.

K C Chou.   

Abstract

It is demonstrated that the observed low-frequency motions with wave numbers of 22 cm-1 and 25 cm-1 for insulin and lysozyme respectively originate from the accordion-like motions of the principal helices therein. The calculated results based on such a model are in good agreement with the observed values. During calculations the role of the internal microenvironment upon the low-frequency motion is naturally revealed, so as to elucidate as well why this kind of low-frequency motion is so sensitive to the conformations of proteins observed.

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Year:  1983        PMID: 6362659      PMCID: PMC1152424          DOI: 10.1042/bj2150465

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  11 in total

Review 1.  Statistical time events in enzymes: a physical assessment.

Authors:  G Careri; P Fasella; E Gratton
Journal:  CRC Crit Rev Biochem       Date:  1975-08

2.  Breathing mode of conformational fluctuations in globular proteins.

Authors:  Y Suezaki; N Go
Journal:  Int J Pept Protein Res       Date:  1975

3.  Low-frequency Raman spectra of lysozyme.

Authors:  L Genzel; F Keilmann; T P Martin; G Winterling; Y Yacoby; H Fröhlich; M W Makinen
Journal:  Biopolymers       Date:  1976-01       Impact factor: 2.505

4.  Energy and negentropy in enzymic catalysis.

Authors:  S Ji
Journal:  Ann N Y Acad Sci       Date:  1974-02-18       Impact factor: 5.691

5.  Conformationally dependent low-frequency motions of proteins by laser Raman spectroscopy.

Authors:  K G Brown; S C Erfurth; E W Small; W L Peticolas
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

6.  Phonon dispersion curves and normal coordinate analysis of -poly-L-alanine.

Authors:  B Fanconi; E W Small; W L Peticolas
Journal:  Biopolymers       Date:  1971       Impact factor: 2.505

7.  Vibrational frequencies and modes of alpha-helix.

Authors:  K Ito; T Shimanouchi
Journal:  Biopolymers       Date:  1970       Impact factor: 2.505

8.  Structural and energetic considerations of wave propagation in DNA.

Authors:  H M Sobell; E D Lozansky; M Lessen
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1979

Review 9.  The anatomy and taxonomy of protein structure.

Authors:  J S Richardson
Journal:  Adv Protein Chem       Date:  1981

10.  Structure of hen egg-white lysozyme. A three-dimensional Fourier synthesis at 2 Angstrom resolution.

Authors:  C C Blake; D F Koenig; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Nature       Date:  1965-05-22       Impact factor: 49.962

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  15 in total

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2.  Low-frequency vibrations of DNA molecules.

Authors:  K C Chou
Journal:  Biochem J       Date:  1984-07-01       Impact factor: 3.857

3.  Low-frequency motions in protein molecules. Beta-sheet and beta-barrel.

Authors:  K C Chou
Journal:  Biophys J       Date:  1985-08       Impact factor: 4.033

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Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
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6.  Quasi-continuum models of twist-like and accordion-like low-frequency motions in DNA.

Authors:  K C Chou; G M Maggiora; B Mao
Journal:  Biophys J       Date:  1989-08       Impact factor: 4.033

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Authors:  Su-Sen Chang; Hung-Jin Huang; Calvin Yu-Chian Chen
Journal:  PLoS Comput Biol       Date:  2011-12-22       Impact factor: 4.475

8.  Insight into a molecular interaction force supporting peptide backbones and its implication to protein loops and folding.

Authors:  Qi-Shi Du; Dong Chen; Neng-Zhong Xie; Ri-Bo Huang; Kuo-Chen Chou
Journal:  J Biomol Struct Dyn       Date:  2014-12-22

9.  Carbon Nanotubes' Effect on Mitochondrial Oxygen Flux Dynamics: Polarography Experimental Study and Machine Learning Models using Star Graph Trace Invariants of Raman Spectra.

Authors:  Michael González-Durruthy; Jose M Monserrat; Bakhtiyor Rasulev; Gerardo M Casañola-Martín; José María Barreiro Sorrivas; Sergio Paraíso-Medina; Víctor Maojo; Humberto González-Díaz; Alejandro Pazos; Cristian R Munteanu
Journal:  Nanomaterials (Basel)       Date:  2017-11-11       Impact factor: 5.076

10.  Surface-Enhanced Raman Spectroscopy Characterization of Breast Cell Phenotypes: Effect of Nanoparticle Geometry.

Authors:  Richard E Darienzo; Jingming Wang; Olivia Chen; Maurinne Sullivan; Tatsiana Mironava; Hyungjin Kim; Rina Tannenbaum
Journal:  ACS Appl Nano Mater       Date:  2019-10-20
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