Literature DB >> 6353373

Similar binding of the carcinostatic drugs cis-[Pt(NH3)2Cl2] and [Ru(NH3)5Cl] Cl2 to tRNAphe and a comparison with the binding of the inactive trans-[Pt(NH3)2Cl2] complex - reluctance in binding to Watson-Crick base pairs within double helix.

J R Rubin, M Sabat, M Sundaralingam.   

Abstract

A comparative study of the binding of square planar cis- and trans-[Pt(NH3)2Cl2] complexes and the octahedral [Ru(NH3)5(H2O)]3+ complex to tRNAphe from yeast was carried out by X-ray crystallography. Both of the carcinostatic compounds, cis-[Pt(NH3)2Cl2] and [Ru(NH3)5(H2O)]3+ show similarities in their mode of binding to tRNA. These complexes bind specifically to the N(7) positions of guanines G15 and G18 in the dihydrouridine loop. [Ru(NH3)5(H2O)]3+ has an additional binding site at N(7) of residue G1 after extensive soaking times (58 days). A noncovalent binding site for ruthenium is also observed in the deep groove of the acceptor stem helix with shorter (25 days) soaking time. The major binding site for the inactive trans-[Pt(NH3)Cl2] complex is at the N(1) position of residue A73, with minor trans-Pt binding sites at the N(7) positions of residues Gm34, G18 and G43. The similarities in the binding modes of cis-[Pt(NH3)2Cl2] and [Ru(NH3)5(H2O)]3+ are expected to be related to their carcinostatic properties.

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Year:  1983        PMID: 6353373      PMCID: PMC326395          DOI: 10.1093/nar/11.18.6571

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

1.  Idealized atomic coordinates of yeast phenylalanine transfer RNA.

Authors:  J L Sussman; S H Kim
Journal:  Biochem Biophys Res Commun       Date:  1976-01-12       Impact factor: 3.575

2.  Letter: The structure of (platinum(ethylenediamine)(guanosine)2)2+ cation.

Authors:  R W Gellert; R Bau
Journal:  J Am Chem Soc       Date:  1975-12-10       Impact factor: 15.419

3.  A crystallographic study of metal-binding to yeast phenylalanine transfer RNA.

Authors:  A Jack; J E Ladner; D Rhodes; R S Brown; A Klug
Journal:  J Mol Biol       Date:  1977-04-15       Impact factor: 5.469

4.  Specific binding of antitumour drug cis-Pt(NH3)2C12 to DNA rich in guanine and cytosine.

Authors:  P J Stone; A D Kelman; F M Sinex
Journal:  Nature       Date:  1974-10-25       Impact factor: 49.962

5.  The mechanism of action of antitumor platinum compounds.

Authors:  J J Roberts; A J Thomson
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1979

6.  Binding of cis- and trans-dichlorodiammineplatinum(II) to nucleosides. I. Location of the binding sites.

Authors:  S Mansy; B Rosenberg; A J Thomson
Journal:  J Am Chem Soc       Date:  1973-03-07       Impact factor: 15.419

7.  Platinum compounds: a new class of potent antitumour agents.

Authors:  B Rosenberg; L VanCamp; J E Trosko; V H Mansour
Journal:  Nature       Date:  1969-04-26       Impact factor: 49.962

8.  The structure of a platinum(II) complex of cytidine-3'-monophosphate.

Authors:  S M Wu; R Bau
Journal:  Biochem Biophys Res Commun       Date:  1979-06-27       Impact factor: 3.575

9.  Physical studies on the binding of cis-dichlorodiamine platinum (II) to DNA and homopolynucleotides.

Authors:  L L Munchausen; R O Rahn
Journal:  Biochim Biophys Acta       Date:  1975-12-19

10.  Nonintercalative binding of ethidium bromide to nucleic acids: crystal structure of an ethidium--tRNA molecular complex.

Authors:  M Liebman; J Rubin; M Sundaralingam
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

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  5 in total

Review 1.  Binding of kinetically inert metal ions to RNA: the case of platinum(II).

Authors:  Erich G Chapman; Alethia A Hostetter; Maire F Osborn; Amanda L Miller; Victoria J DeRose
Journal:  Met Ions Life Sci       Date:  2011

2.  Crosslinking of elongation factor Tu to tRNA(Phe) by trans-diamminedichloroplatinum (II). Characterization of two crosslinking sites in the tRNA.

Authors:  F P Wikman; P Romby; M H Metz; J Reinbolt; B F Clark; J P Ebel; C Ehresmann; B Ehresmann
Journal:  Nucleic Acids Res       Date:  1987-07-24       Impact factor: 16.971

3.  Hexammineruthenium(III) ion interactions with Z-DNA.

Authors:  D Bharanidharan; S Thiyagarajan; N Gautham
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-11-21

4.  Note added in proof.

Authors: 
Journal:  EMBO J       Date:  1984-05       Impact factor: 11.598

5.  Reaction of cis-diamminedichloroplatinum (II) and DNA in B or Z conformation.

Authors:  J M Malinge; M Leng
Journal:  EMBO J       Date:  1984-06       Impact factor: 11.598

  5 in total

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