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Literature DB >> 6344016

Compilation and analysis of Escherichia coli promoter DNA sequences.

Abstract

The DNA sequence of 168 promoter regions (-50 to +10) for Escherichia coli RNA polymerase were compiled. The complete listing was divided into two groups depending upon whether or not the promoter had been defined by genetic (promoter mutations) or biochemical (5' end determination) criteria. A consensus promoter sequence based on homologies among 112 well-defined promoters was determined that was in substantial agreement with previous compilations. In addition, we have tabulated 98 promoter mutations. Nearly all of the altered base pairs in the mutants conform to the following general rule: down-mutations decrease homology and up-mutations increase homology to the consensus sequence.

Entities: Gene Species

Mesh：

Substances：

Year: 1983 PMID： 6344016 PMCID： PMC325881 DOI： 10.1093/nar/11.8.2237

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

177 in total

Review 1. Regulatory sequences involved in the promotion and termination of RNA transcription.

Authors: M Rosenberg; D Court
Journal: Annu Rev Genet Date: 1979 Impact factor: 16.830

2. DNA sequences of promoter regions for rRNA operons rrnE and rrnA in E. coli.

Authors: H A de Boer; S F Gilbert; M Nomura
Journal: Cell Date: 1979-05 Impact factor: 41.582

3. Nucleotide sequence of an Escherichia coli tRNA (Leu 1) operon and identification of the transcription promoter signal.

Authors: G Duester; R K Campen; W M Holmes
Journal: Nucleic Acids Res Date: 1981-05-11 Impact factor: 16.971

4. Positively activated transcription of lambda integrase gene initiates with UTP in vivo.

Authors: U Schmeissner; D Court; K McKenney; M Rosenberg
Journal: Nature Date: 1981-07-09 Impact factor: 49.962

5. Characterization of the beta-lactamase promoter of pBR322.

Authors: D R Russell; G N Bennett
Journal: Nucleic Acids Res Date: 1981-06-11 Impact factor: 16.971

6. Nucleotide sequence of the trpD gene, encoding anthranilate synthetase component II of Escherichia coli.

Authors: H Horowitz; G E Christie; T Platt
Journal: J Mol Biol Date: 1982-04-05 Impact factor: 5.469

7. The RNA primer promoter, as defined in vitro, is essential for pMB1 plasmid replication in vivo.

Authors: G Cesareni
Journal: J Mol Biol Date: 1982-09 Impact factor: 5.469

Review 8. lambda Repressor and cro--components of an efficient molecular switch.

Authors: A D Johnson; A R Poteete; G Lauer; R T Sauer; G K Ackers; M Ptashne
Journal: Nature Date: 1981-11-19 Impact factor: 49.962

9. Structure and regulation of aroH, the structural gene for the tryptophan-repressible 3-deoxy-D-arabino-heptulosonic acid-7-phosphate synthetase of Escherichia coli.

Authors: G Zurawski; R P Gunsalus; K D Brown; C Yanofsky
Journal: J Mol Biol Date: 1981-01-05 Impact factor: 5.469

10. Studies on bacteriophage fd DNA. III. Nucleotide sequence preceding the RNA start-site on a promoter-containing fragment.

Authors: K Sugimoto; H Sugisaki; T Okamoto; M Takanami
Journal: Nucleic Acids Res Date: 1975-11 Impact factor: 16.971

1039 in total

1. Function-based selection and characterization of base-pair polymorphisms in a promoter of Escherichia coli RNA polymerase-sigma(70).

Authors: J Xu; B C McCabe; G B Koudelka
Journal: J Bacteriol Date: 2001-05 Impact factor: 3.490

2. CS5 pilus biosynthesis genes from enterotoxigenic Escherichia coli O115:H40.

Authors: T G Duthy; L H Staendner; P A Manning; M W Heuzenroeder
Journal: J Bacteriol Date: 1999-09 Impact factor: 3.490

3. Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit.

Authors: S T Estrem; W Ross; T Gaal; Z W Chen; W Niu; R H Ebright; R L Gourse
Journal: Genes Dev Date: 1999-08-15 Impact factor: 11.361

4. Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

Authors: M S Fenton; S J Lee; J D Gralla
Journal: EMBO J Date: 2000-03-01 Impact factor: 11.598

5. An IS257-derived hybrid promoter directs transcription of a tetA(K) tetracycline resistance gene in the Staphylococcus aureus chromosomal mec region.

Authors: A E Simpson; R A Skurray; N Firth
Journal: J Bacteriol Date: 2000-06 Impact factor: 3.490