Literature DB >> 6327292

The complete nucleotide sequence of the TL-DNA of the Agrobacterium tumefaciens plasmid pTiAch5.

J Gielen, M De Beuckeleer, J Seurinck, F Deboeck, H De Greve, M Lemmers, M Van Montagu, J Schell.   

Abstract

We have determined the complete primary structure (13 637 bp) of the TL-region of Agrobacterium tumefaciens octopine plasmid pTiAch5 . This sequence comprises two small direct repeats which flank the TL-region at each extremity and are involved in the transfer and/or integration of this DNA segment in plants. TL-DNA specifies eight open-reading frames corresponding to experimentally identified transcripts in crown gall tumor tissue. The eight coding regions are not interrupted by intervening sequences and are separated from each other by AT-rich regions. Potential transcriptional control signals upstream of the 5' and 3' ends of all the transcribed regions resemble typical eukaryotic signals: (i) transcriptional initiation signals ('TATA' or Goldberg- Hogness box) are present upstream to the presumed translational start codons; (ii) ' CCAAT ' sequences are present upstream of the proposed 'TATA' box; (iii) polyadenylation signals are present in the 3'-untranslated regions. Furthermore, no Shine-Dalgarno sequences are present upstream of the presumed translational start codons.

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Year:  1984        PMID: 6327292      PMCID: PMC557436          DOI: 10.1002/j.1460-2075.1984.tb01894.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  56 in total

1.  Detection of 5-methylcytosine in DNA sequences.

Authors:  H Ohmori; J I Tomizawa; A M Maxam
Journal:  Nucleic Acids Res       Date:  1978-05       Impact factor: 16.971

2.  Molecular cloning of overlapping segments of the nopaline Ti-plasmid pTiC58 as a means to restriction endonuclease mapping.

Authors:  A Depicker; M De Wilde; G De Vos; R De Vos; M Van Montagu; J Schell
Journal:  Plasmid       Date:  1980-03       Impact factor: 3.466

3.  The ovalbumin gene-sequence of putative control regions.

Authors:  C Benoist; K O'Hare; R Breathnach; P Chambon
Journal:  Nucleic Acids Res       Date:  1980-01-11       Impact factor: 16.971

4.  Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification.

Authors:  J C Shepherd
Journal:  Proc Natl Acad Sci U S A       Date:  1981-03       Impact factor: 11.205

5.  DNA from the A6S/2 crown gall tumor contains scrambled Ti-plasmid sequences near its junctions with plant DNA.

Authors:  R B Simpson; P J O'Hara; W Kwok; A L Montoya; C Lichtenstein; M P Gordon; E W Nester
Journal:  Cell       Date:  1982-07       Impact factor: 41.582

6.  Nucleotide sequence and transcript map of the Agrobacterium tumefaciens Ti plasmid-encoded octopine synthase gene.

Authors:  H De Greve; P Dhaese; J Seurinck; M Lemmers; M Van Montagu; J Schell
Journal:  J Mol Appl Genet       Date:  1982

7.  Complete nucleotide sequence of a soybean actin gene.

Authors:  D M Shah; R C Hightower; R B Meagher
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

8.  Size heterogeneity in the 3' end of dihydrofolate reductase messenger RNAs in mouse cells.

Authors:  D R Setzer; M McGrogan; J H Nunberg; R T Schimke
Journal:  Cell       Date:  1980-11       Impact factor: 41.582

9.  Size, location and polarity of T-DNA-encoded transcripts in nopaline crown gall tumors; common transcripts in octopine and nopaline tumors.

Authors:  L Willmitzer; P Dhaese; P H Schreier; W Schmalenbach; M Van Montagu; J Schell
Journal:  Cell       Date:  1983-04       Impact factor: 41.582

10.  The conserved part of the T-region in Ti-plasmids expresses four proteins in bacteria.

Authors:  G Schröder; W Klipp; A Hillebrand; R Ehring; C Koncz; J Schröder
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

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  69 in total

1.  Development of an efficient two-element transposon tagging system in Arabidopsis thaliana.

Authors:  I Bancroft; A M Bhatt; C Sjodin; S Scofield; J D Jones; C Dean
Journal:  Mol Gen Genet       Date:  1992-06

2.  Organization and functional analysis of three T-DNAs from the vitopine Ti plasmid pTiS4.

Authors:  J Canaday; J C Gérad; P Crouzet; L Otten
Journal:  Mol Gen Genet       Date:  1992-11

3.  Construction and use of Agrobacterium tumefaciens binary vectors with A. tumefaciens C58 T-DNA genes.

Authors:  J Vlasák; M Ondrej
Journal:  Folia Microbiol (Praha)       Date:  1992       Impact factor: 2.099

4.  Integration of Agrobacterium T-DNA into a tobacco chromosome: possible involvement of DNA homology between T-DNA and plant DNA.

Authors:  S Matsumoto; Y Ito; T Hosoi; Y Takahashi; Y Machida
Journal:  Mol Gen Genet       Date:  1990-12

5.  Functional analysis of a complex oncogene arrangement in biotype III Agrobacterium tumefaciens strains.

Authors:  B Huss; B Tinland; F Paulus; B Walter; L Otten
Journal:  Plant Mol Biol       Date:  1990-02       Impact factor: 4.076

6.  Expression and assembly of functional bacterial luciferase in plants.

Authors:  C Koncz; O Olsson; W H Langridge; J Schell; A A Szalay
Journal:  Proc Natl Acad Sci U S A       Date:  1987-01       Impact factor: 11.205

7.  Selective and accurate initiation of transcription at the T-DNA promoter in a soluble chromatin extract from wheat germ.

Authors:  K Yamazaki; F Imamoto
Journal:  Mol Gen Genet       Date:  1987-10

8.  A plasmid sequence from Rhizobium leguminosarum 300 contains homology to sequences near the octopine TL-DNA right border.

Authors:  A C Yun; R G Hadley; A A Szalay
Journal:  Mol Gen Genet       Date:  1987-10

9.  Conserved function in Nicotiana tabacum of a single Drosophila hsp70 promoter heat shock element when fused to a minimal T-DNA promoter.

Authors:  D Wing; C Koncz; J Schell
Journal:  Mol Gen Genet       Date:  1989-10

10.  Agrobacterium vitis nopaline Ti plasmid pTiAB4: relationship to other Ti plasmids and T-DNA structure.

Authors:  L Otten; P De Ruffray
Journal:  Mol Gen Genet       Date:  1994-11-15
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