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Literature DB >> 6324087

Localization and DNA sequence around the initiation site of ribosomal RNA transcription in Physarum polycephalum.

B Blum, T Seebeck, R Braun, P Ferris, V Vogt.

Abstract

We have used S1 nuclease to map the initiation site of ribosomal RNA transcription in the acellular slime mold Physarum polycephalum, and we have determined the sequence of 1011 nucleotides surrounding the start site. Consistent with others' observations, there is little homology with the comparable region of other species. As predicted by previous restriction mapping, direct repeats roughly 30 base pairs in length are present upstream of the initiation site and a 148 base pair duplication occurs in the external transcribed spacer. The results also suggest the presence of a processing site within the external transcribed spacer of the ribosomal transcription unit.

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Year: 1983 PMID： 6324087 PMCID： PMC326600 DOI： 10.1093/nar/11.23.8519

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

49 in total

1. Structure of ribosomal DNA in Physarum polycephalum.

Authors: V M Vogt; R Braun
Journal: J Mol Biol Date: 1976-09-25 Impact factor: 5.469

2. Organisation of genes for ribosomal RNA in Physarum polycephalum.

Authors: H V Molgaard; H R Matthews; E M Bradbury
Journal: Eur J Biochem Date: 1976-09-15

3. End labeling of enzymatically decapped mRNA.

Authors: A Efstratiadis; J N Vournakis; H Donis-Keller; G Chaconas; D K Dougall; F C Kafatos
Journal: Nucleic Acids Res Date: 1977-12 Impact factor: 16.971

4. Unique sequence arrangement of ribosomal genes in the palindromic rDNA molecule of Physarum polycephalum.

Authors: G R Campbell; V C Littau; P W Melera; V G Allfrey; E M Johnson
Journal: Nucleic Acids Res Date: 1979-04 Impact factor: 16.971

5. Isolation of the nuclear histones from the Myxomycete, Physarum polycephalum.

Authors: J Mohberg; H P Rusch
Journal: Arch Biochem Biophys Date: 1969-11 Impact factor: 4.013

6. Initiation of transcription of ribosomal deoxyribonucleic acid sequences in isolated nuclei of Physarum polycephalum: studies using nucleoside 5'-[gamma-S]triphosphates and labeled precursors.

Authors: I Y Sun; E M Johnson; V G Allfrey
Journal: Biochemistry Date: 1979-10-16 Impact factor: 3.162

7. The intervening sequence in the 26S rRNA coding region of T. thermophila is transcribed within the largest stable precursor for rRNA.

Authors: N Din; J Engberg; W Kaffenberger; W A Eckert
Journal: Cell Date: 1979-10 Impact factor: 41.582

8. The nucleotide sequence of the initiation and termination sites for ribosomal RNA transcription in X. laevis.

Authors: B Sollner-Webb; R H Reeder
Journal: Cell Date: 1979-10 Impact factor: 41.582

9. Sequence organization of the spacer DNA in a ribosomal gene unit of Xenopus laevis.

Authors: P Boseley; T Moss; M Mächler; R Portmann; M Birnstiel
Journal: Cell Date: 1979-05 Impact factor: 41.582

10. Ribosomal RNA genes of Saccharomyces cerevisiae. II. Physical map and nucleotide sequence of the 5 S ribosomal RNA gene and adjacent intergenic regions.

Authors: P Valenzuela; G I Bell; A Venegas; E T Sewell; F R Masiarz; L J DeGennaro; F Weinberg; W J Rutter
Journal: J Biol Chem Date: 1977-11-25 Impact factor: 5.157

7 in total

1. Effects of single-base substitutions within the Acanthamoeba castellanii rRNA promoter on transcription and on binding of transcription initiation factor and RNA polymerase I.

Authors: P Kownin; E Bateman; M R Paule
Journal: Mol Cell Biol Date: 1988-02 Impact factor: 4.272

Localization and DNA sequence around the initiation site of ribosomal RNA transcription in Physarum polycephalum.

1. Structure of ribosomal DNA in Physarum polycephalum.

2. Organisation of genes for ribosomal RNA in Physarum polycephalum.

3. End labeling of enzymatically decapped mRNA.

4. Unique sequence arrangement of ribosomal genes in the palindromic rDNA molecule of Physarum polycephalum.

5. Isolation of the nuclear histones from the Myxomycete, Physarum polycephalum.

6. Initiation of transcription of ribosomal deoxyribonucleic acid sequences in isolated nuclei of Physarum polycephalum: studies using nucleoside 5'-[gamma-S]triphosphates and labeled precursors.

7. The intervening sequence in the 26S rRNA coding region of T. thermophila is transcribed within the largest stable precursor for rRNA.

8. The nucleotide sequence of the initiation and termination sites for ribosomal RNA transcription in X. laevis.

9. Sequence organization of the spacer DNA in a ribosomal gene unit of Xenopus laevis.

10. Ribosomal RNA genes of Saccharomyces cerevisiae. II. Physical map and nucleotide sequence of the 5 S ribosomal RNA gene and adjacent intergenic regions.

1. Effects of single-base substitutions within the Acanthamoeba castellanii rRNA promoter on transcription and on binding of transcription initiation factor and RNA polymerase I.

2. Processing in the external transcribed spacer of ribosomal RNA from Physarum polycephalum.

3. Structure of the Bombyx mori rDNA: initiation site for its transcription.

4. Nucleotide sequence of a complete ribosomal spacer of D. melanogaster.

5. The rDNA of C. elegans: sequence and structure.

6. Structure of a Neurospora RNA polymerase I promoter defined by transcription in vitro with homologous extracts.

7. Primary processing of mammalian rRNA involves two adjacent cleavages and is not species specific.