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Literature DB >> 6285352

Estimation of phylogenetic relationships from DNA restriction patterns and selection of endonuclease cleavage sites.

Abstract

The distribution of cleavage sites and their related sequences have been analyzed for 54 restriction endonucleases in the genome of human mitochondrial DNA; in three papova viruses, BK, simian virus 40, and polyoma; and in three bacteriophages, phi X174, fd, and G4. The results show that the cleavage sites and related sequences for most of the restriction enzymes tested are distributed nonrandomly. These results (i) constitute prima facie evidence for the action of natural selection, either direct or indirect on the restriction sites, and (ii) suggest that estimates of phylogenetic relationship, based on a phenetic approach using restriction enzyme data, will be biased.

Entities: Disease Species

Mesh：

Substances：

Year: 1982 PMID： 6285352 PMCID： PMC346461 DOI： 10.1073/pnas.79.11.3560

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

32 in total

1. Complete nucleotide sequence of SV40 DNA.

Authors: W Fiers; R Contreras; G Haegemann; R Rogiers; A Van de Voorde; H Van Heuverswyn; J Van Herreweghe; G Volckaert; M Ysebaert
Journal: Nature Date: 1978-05-11 Impact factor: 49.962

2. Estimation of DNA sequence divergence from comparison of restriction endonuclease digests.

Authors: W B Upholt
Journal: Nucleic Acids Res Date: 1977 Impact factor: 16.971

3. Mapping of mitochondrial DNA of individual sheep and goats: rapid evolution in the D loop region.

Authors: W B Upholt; I B Dawid
Journal: Cell Date: 1977-07 Impact factor: 41.582

4. An approach to evolutionary relationships of mammalian DNA viruses through analysis of the pattern of nearest neighbor base sequences.

Authors: H Subak-Sharpe; R R Bürk; L V Crawford; J M Morrison; J Hay; H M Keir
Journal: Cold Spring Harb Symp Quant Biol Date: 1966

5. A novel bacteriophage defence mechanism: the anti-restriction protein.

Authors: N Spoerel; P Herrlich; T A Bickle
Journal: Nature Date: 1979-03-01 Impact factor: 49.962

6. Eukaryotic dinucleotide preference rules and their implications for degenerate codon usage.

Authors: R Nussinov
Journal: J Mol Biol Date: 1981-06-15 Impact factor: 5.469

7. The nucleotide sequence and restriction enzyme sites of the polyoma genome.

Authors: P L Deninger; A Esty; P LaPorte; H Hsu; T Friedmann
Journal: Nucleic Acids Res Date: 1980-02-25 Impact factor: 16.971

8. Coding potential and regulatory signals of the polyoma virus genome.

Authors: E Soeda; J R Arrand; N Smolar; J E Walsh; B E Griffin
Journal: Nature Date: 1980-01-31 Impact factor: 49.962

9. Sequence and organization of the human mitochondrial genome.

Authors: S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal: Nature Date: 1981-04-09 Impact factor: 49.962

10. Nucleotide sequence of bacteriophage fd DNA.

Authors: E Beck; R Sommer; E A Auerswald; C Kurz; B Zink; G Osterburg; H Schaller; K Sugimoto; H Sugisaki; T Okamoto; M Takanami
Journal: Nucleic Acids Res Date: 1978-12 Impact factor: 16.971

18 in total

1. Comparison of restriction endonucleases and sources of probes for their efficiency in detecting restriction fragment length polymorphisms in lettuce (Lactuca sativa L.).

Authors: B S Landry; R Kesseli; H Leung; R W Michelmore
Journal: Theor Appl Genet Date: 1987-09 Impact factor: 5.699

2. Characterization of soybean chloroplast ribosomal RNA genes.

Authors: G Singh; G de Lanversin; N A Straus; D T Pillay
Journal: Curr Genet Date: 1984-12 Impact factor: 3.886

3. Mitochondrial DNA polymorphism in Japanese. II. Analysis with restriction enzymes of four or five base pair recognition.

Authors: S Horai; E Matsunaga
Journal: Hum Genet Date: 1986-02 Impact factor: 4.132

Estimation of phylogenetic relationships from DNA restriction patterns and selection of endonuclease cleavage sites.

1. Complete nucleotide sequence of SV40 DNA.

2. Estimation of DNA sequence divergence from comparison of restriction endonuclease digests.

3. Mapping of mitochondrial DNA of individual sheep and goats: rapid evolution in the D loop region.

4. An approach to evolutionary relationships of mammalian DNA viruses through analysis of the pattern of nearest neighbor base sequences.

5. A novel bacteriophage defence mechanism: the anti-restriction protein.

6. Eukaryotic dinucleotide preference rules and their implications for degenerate codon usage.

7. The nucleotide sequence and restriction enzyme sites of the polyoma genome.

8. Coding potential and regulatory signals of the polyoma virus genome.

9. Sequence and organization of the human mitochondrial genome.

10. Nucleotide sequence of bacteriophage fd DNA.

1. Comparison of restriction endonucleases and sources of probes for their efficiency in detecting restriction fragment length polymorphisms in lettuce (Lactuca sativa L.).

2. Characterization of soybean chloroplast ribosomal RNA genes.

3. Mitochondrial DNA polymorphism in Japanese. II. Analysis with restriction enzymes of four or five base pair recognition.

4. Rates of nuclear DNA evolution in pheasant-like birds: evidence from restriction maps.

5. N4-methylcytosine as a minor base in bacterial DNA.

6. Mitochondrial DNA polymorphism in Japanese. I. Analysis with restriction enzymes of six base pair recognition.

7. Optimizing selection of restriction enzymes in the search for DNA variants.

8. Demographic influences on mitochondrial DNA lineage survivorship in animal populations.

9. A convenient method for locating sets of related short sequences in DNA sequences of any length.

10. Cloning and characterization of Daphnia mitochondrial DNA.