Literature DB >> 6262736

Comparison of the nucleoside sequence of trpA and sequences immediately beyond the trp operon of Klebsiella aerogenes. Salmonella typhimurium and Escherichia coli.

B P Nichols, M Blumenberg, C Yanofsky.   

Abstract

The nucleotide sequence of trpA of Klebsiella aerogenes is presented and compared with the trpA sequences of Salmonella typhimurium and Escherichia coli. The majority of the approximately 200 differences between each pair of trpA's are single nucleotide pair changes that do not alter the amino acid sequence. Codon usage conforms to the general patterns revealed by examination of other prokaryotic gene sequences. However, codon usage in K. aerogenes trpA reflects the high G+C content of the genome of this organism. The DNA sequences just beyond trpA, the presumed transcription termination region, are also compared for the three species. Perusal of these sequences indicates that the secondary structure of the transcript segment just beyond trpA has been preserved, while the primary sequence has diverged appreciably.

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Year:  1981        PMID: 6262736      PMCID: PMC326794          DOI: 10.1093/nar/9.7.1743

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  Structural and functional analysis of cloned deoxyribonucleic acid containing the trpR-thr region of the Escherichia coli chromosome.

Authors:  R P Gunsalus; G Zurawski; C Yanofsky
Journal:  J Bacteriol       Date:  1979-10       Impact factor: 3.490

2.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

3.  Computer analysis of nucleic acid regulatory sequences.

Authors:  L J Korn; C L Queen; M N Wegman
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

4.  Nucleotide sequences of trpA of Salmonella typhimurium and Escherichia coli: an evolutionary comparison.

Authors:  B P Nichols; C Yanofsky
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

5.  Stability of ribonucleic acid double-stranded helices.

Authors:  P N Borer; B Dengler; I Tinoco; O C Uhlenbeck
Journal:  J Mol Biol       Date:  1974-07-15       Impact factor: 5.469

6.  Enzyme evolution in the Enterobacteriaceae.

Authors:  G T Cocks; A C Wilson
Journal:  J Bacteriol       Date:  1972-06       Impact factor: 3.490

7.  Improved estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal:  Nat New Biol       Date:  1973-11-14

Review 8.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

9.  Codon catalog usage is a genome strategy modulated for gene expressivity.

Authors:  R Grantham; C Gautier; M Gouy; M Jacobzone; R Mercier
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

10.  Transcription of the operator proximal and distal ends of the tryptophan operon: evidence that trpE and trpA are the delimiting structural genes.

Authors:  J K Rose; C Yanofsky
Journal:  J Bacteriol       Date:  1971-10       Impact factor: 3.490

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  23 in total

1.  Molecular Cloning of the Tryptophan Operon from an Aeromonas hydrophila Freshwater Isolate.

Authors:  J Anguita; O Rivero; G Naharro
Journal:  Appl Environ Microbiol       Date:  1992-03       Impact factor: 4.792

2.  Variation in G + C-content and codon choice: differences among synonymous codon groups in vertebrate genes.

Authors:  A Marín; J Bertranpetit; J L Oliver; J R Medina
Journal:  Nucleic Acids Res       Date:  1989-08-11       Impact factor: 16.971

3.  Compositional constraints and genome evolution.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

4.  Organization and temporal expression of a flagellar basal body gene in Caulobacter crescentus.

Authors:  K M Hahnenberger; L Shapiro
Journal:  J Bacteriol       Date:  1988-09       Impact factor: 3.490

5.  Ribitol dehydrogenase of Klebsiella aerogenes. Sequence of the structural gene.

Authors:  T Loviny; P M Norton; B S Hartley
Journal:  Biochem J       Date:  1985-09-15       Impact factor: 3.857

6.  Diversity in G + C content at the third position of codons in vertebrate genes and its cause.

Authors:  S Aota; T Ikemura
Journal:  Nucleic Acids Res       Date:  1986-08-26       Impact factor: 16.971

Review 7.  Phosphoenolpyruvate:carbohydrate phosphotransferase system of bacteria.

Authors:  P W Postma; J W Lengeler
Journal:  Microbiol Rev       Date:  1985-09

8.  Nucleotide sequence of the R.meliloti nitrogenase reductase (nifH) gene.

Authors:  I Török; A Kondorosi
Journal:  Nucleic Acids Res       Date:  1981-11-11       Impact factor: 16.971

9.  Nucleotide sequence of Klebsiella pneumoniae lac genes.

Authors:  W E Buvinger; M Riley
Journal:  J Bacteriol       Date:  1985-09       Impact factor: 3.490

10.  Analysis of the nucleotide sequence of the ereB gene encoding the erythromycin esterase type II.

Authors:  M Arthur; D Autissier; P Courvalin
Journal:  Nucleic Acids Res       Date:  1986-06-25       Impact factor: 16.971

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