Literature DB >> 6229791

Two-dimensional 1H NMR study of the lambda operator site OL1: a sequential assignment strategy and its application.

M A Weiss, D J Patel, R T Sauer, M Karplus.   

Abstract

The solution structure and dynamics of the 17-base-pair synthetic operator site OL1, which is recognized by the cI and Cro repressors of bacteriophage lambda, is studied by two-dimensional NMR methods. A sequential assignment strategy for nucleic acids is proposed and illustrated by the assignments of the base and sugar protons of OL1.

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Year:  1984        PMID： 6229791      PMCID： PMC344624          DOI： 10.1073/pnas.81.1.130

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  9 in total

1.  Pulsed FT-NMR double resonance studies of yeast tRNAPhe: specific nuclear Overhauser effects and reinterpretation of low temperature relaxation data.

Authors:  P D Johnston; A G Redfield
Journal:  Nucleic Acids Res       Date:  1978-10       Impact factor: 16.971

2.  DNA conformation, dynamics, and interactions in solution.

Authors:  D J Patel; A Pardi; K Itakura
Journal:  Science       Date:  1982-05-07       Impact factor: 47.728

3.  Sequence-specific recognition of deoxyribonucleic acid. Chemical synthesis and nuclear magnetic resonance assignment of the imino protons of lambda OR3 operator deoxyribonucleic acid.

Authors:  S H Chou; D R Hare; D E Wemmer; B R Reid
Journal:  Biochemistry       Date:  1983-06-21       Impact factor: 3.162

4.  Base sequence and helix structure variation in B and A DNA.

Authors:  R E Dickerson
Journal:  J Mol Biol       Date:  1983-05-25       Impact factor: 5.469

5.  Sequential resonance assignments as a basis for determination of spatial protein structures by high resolution proton nuclear magnetic resonance.

Authors:  K Wüthrich; G Wider; G Wagner; W Braun
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

6.  The operator-binding domain of lambda repressor: structure and DNA recognition.

Authors:  C O Pabo; M Lewis
Journal:  Nature       Date:  1982-07-29       Impact factor: 49.962

Review 7.  lambda Repressor and cro--components of an efficient molecular switch.

Authors:  A D Johnson; A R Poteete; G Lauer; R T Sauer; G K Ackers; M Ptashne
Journal:  Nature       Date:  1981-11-19       Impact factor: 49.962

8.  Structure of the cro repressor from bacteriophage lambda and its interaction with DNA.

Authors:  W F Anderson; D H Ohlendorf; Y Takeda; B W Matthews
Journal:  Nature       Date:  1981-04-30       Impact factor: 49.962

9.  Sequence dependence of base-pair stacking in right-handed DNA in solution: proton nuclear Overhauser effect NMR measurements.

Authors:  D J Patel; S A Kozlowski; R Bhatt
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205
  9 in total
  27 in total

1.  A new model for the bending of DNAs containing the oligo(dA) tracts based on NMR observations.

Authors:  M Katahira; H Sugeta; Y Kyogoku
Journal:  Nucleic Acids Res       Date:  1990-02-11       Impact factor: 16.971

2.  The solution conformations of a mutant trp operator determined by n.m.r. spectroscopy.

Authors:  A N Lane
Journal:  Biochem J       Date:  1991-01-15       Impact factor: 3.857

3.  Formation of sheared G:A base pairs in an RNA duplex modelled after ribozymes, as revealed by NMR.

Authors:  M Katahira; M Kanagawa; H Sato; S Uesugi; S Fujii; T Kohno; T Maeda
Journal:  Nucleic Acids Res       Date:  1994-07-25       Impact factor: 16.971

4.  Two-dimensional NMR investigation of a bent DNA fragment: assignment of the proton resonances and preliminary structure analysis.

Authors:  A Kintanar; R E Klevit; B R Reid
Journal:  Nucleic Acids Res       Date:  1987-07-24       Impact factor: 16.971

5.  Resonance assignments of non-exchangeable protons in B type DNA oligomers, an overview.

Authors:  F J van de Ven; C W Hilbers
Journal:  Nucleic Acids Res       Date:  1988-07-11       Impact factor: 16.971

6.  Study of structure, base-pair opening kinetics and proton exchange mechanism of the d-(AATTGCAATT) self-complementary oligodeoxynucleotide in solution.

Authors:  M Kochoyan; G Lancelot; J L Leroy
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

7.  Structure-function relationships in human testis-determining factor SRY: an aromatic buttress underlies the specific DNA-bending surface of a high mobility group (HMG) box.

Authors:  Joseph D Racca; Yen-Shan Chen; James D Maloy; Nalinda Wickramasinghe; Nelson B Phillips; Michael A Weiss
Journal:  J Biol Chem       Date:  2014-09-24       Impact factor: 5.157

8.  N.m.r. assignments and temperature-dependent conformational transitions of a mutant trp operator-promoter in solution.

Authors:  A N Lane
Journal:  Biochem J       Date:  1989-05-01       Impact factor: 3.857

9.  Solution structure of oligonucleotides covalently linked to a psoralen derivative.

Authors:  O Bornet; C Prévost; F Vovelle; M Chassignol; N T Thuong; G Lancelot
Journal:  Nucleic Acids Res       Date:  1995-03-11       Impact factor: 16.971

10.  Base pairing configuration and stability of an oligonucleotide duplex containing a 5-chlorouracil-adenine base pair.

Authors:  Jacob A Theruvathu; Cherine H Kim; Daniel K Rogstad; Jonathan W Neidigh; Lawrence C Sowers
Journal:  Biochemistry       Date:  2009-08-11       Impact factor: 3.162
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