Literature DB >> 6180777

Structure in tRNA data.

H Grosjean, R J Cedergren, W McKay.   

Abstract

260 sequences of tRNA are compared, after their classification into six categories: prokaryotic (83 sequences) and eukaryotic (83 sequences) elongators, prokaryotic (10 sequences) and eukaryotic (11 sequences), initiators, lower eukaryotic mitochondrial tRNA (53 sequences) and archaebacterial tRNA (20 sequences). Beside the presence of invariable and semi-invariable positions in tRNA, non-random base distribution in almost all positions is also evident; most of them being characteristic of each class of tRNA. Therefore, during evolution it would seem that selectional pressures do act in so called variable positions as well as invariant positions of tRNA molecules. Results are discussed in relation to possible restrictions depending on functional and/or structural constraints of tRNA.

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Year:  1982        PMID: 6180777     DOI: 10.1016/s0300-9084(82)80576-2

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  15 in total

1.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

2.  Turnip yellow mosaic virus RNAs with anticodon loop substitutions that result in decreased valylation fail to replicate efficiently.

Authors:  C H Tsai; T W Dreher
Journal:  J Virol       Date:  1991-06       Impact factor: 5.103

3.  Identification of two methionine transfer RNA genes in the maize mitochondrial genome.

Authors:  T D Parks; W G Dougherty; C S Levings; D H Timothy
Journal:  Plant Physiol       Date:  1984-12       Impact factor: 8.340

4.  A multiple sequence comparison method.

Authors:  A K Wong; S C Chan; D K Chiu
Journal:  Bull Math Biol       Date:  1993-03       Impact factor: 1.758

5.  In vitro construction of yeast tRNAAsp variants: nucleotide substitutions and additions in T-stem and T-loop.

Authors:  P Carbon; J P Ebel
Journal:  Nucleic Acids Res       Date:  1987-03-11       Impact factor: 16.971

6.  A human tRNAGlu gene of high transcriptional activity.

Authors:  J P Goddard; M Squire; M Bienz; J D Smith
Journal:  Nucleic Acids Res       Date:  1983-05-11       Impact factor: 16.971

7.  Archetypical features in tRNA families.

Authors:  K Nicoghosian; M Bigras; D Sankoff; R Cedergren
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

8.  Unique secondary and tertiary structural features of the eucaryotic selenocysteine tRNA(Sec).

Authors:  C Sturchler; E Westhof; P Carbon; A Krol
Journal:  Nucleic Acids Res       Date:  1993-03-11       Impact factor: 16.971

9.  Isolation and nucleotide sequence analysis of tRNAAlaGGC from Escherichia coli K-12.

Authors:  B H Mims; N E Prather; E J Murgola
Journal:  J Bacteriol       Date:  1985-05       Impact factor: 3.490

10.  Nucleotide sequences of two serine tRNAs with a GGA anticodon: the structure-function relationships in the serine family of E. coli tRNAs.

Authors:  H Grosjean; K Nicoghosian; E Haumont; D Söll; R Cedergren
Journal:  Nucleic Acids Res       Date:  1985-08-12       Impact factor: 16.971

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