Literature DB >> 570420

Sequence organization of the soybean genome.

W B Gurley, A G Hepburn, J L Key.   

Abstract

The total complexity of one constituent soybean (Glycine max) genome is estimated to be 1.29 . 10(9) nucleotide pairs, as determined by analysis of the reassociation kinetics of sheared (0.47 kilobase) DNA. Single copy sequences are estimated to represent from 53 to 64% of the genome by analysis of hydroxyapatite binding of repetitive DNA as a function of fragment length. From 65 to 70% of these single copy sequences have a short period interspersion with 1.11--1.36 kilobase lengths alternating with 0.3--0.4 kilobase repetitive sequence elements. The repetitive sequences of soybean DNA are interspersed both among themselves and among single copy regions of the genome.

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Year:  1979        PMID: 570420     DOI: 10.1016/0005-2787(79)90500-8

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  24 in total

1.  A BAC- and BIBAC-based physical map of the soybean genome.

Authors:  Chengcang Wu; Shuku Sun; Padmavathi Nimmakayala; Felipe A Santos; Khalid Meksem; Rachael Springman; Kejiao Ding; David A Lightfoot; Hong-Bin Zhang
Journal:  Genome Res       Date:  2004-01-12       Impact factor: 9.043

2.  The genomic relationships among six wild perennial species of the genus Glycine subgenus Glycine Willd.

Authors:  R J Singh; T Hymowitz
Journal:  Theor Appl Genet       Date:  1985-12       Impact factor: 5.699

3.  Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps.

Authors:  Jason G Walling; Randy Shoemaker; Nevin Young; Joann Mudge; Scott Jackson
Journal:  Genetics       Date:  2005-12-15       Impact factor: 4.562

4.  Characterization of the rice (Oryza sativa) actin gene family.

Authors:  D McElroy; M Rothenberg; K S Reece; R Wu
Journal:  Plant Mol Biol       Date:  1990-08       Impact factor: 4.076

5.  A major satellite DNA of soybean is a 92-base pairs tandem repeat.

Authors:  A Kolchinsky; P M Gresshoff
Journal:  Theor Appl Genet       Date:  1995-04       Impact factor: 5.699

6.  Characterization and application of soybean YACs to molecular cytogenetics.

Authors:  T Zhu; I Shi; R P Funke; P M Gresshoff; P Keim
Journal:  Mol Gen Genet       Date:  1996-09-25

7.  Hypomethylated sequences: characterization of the duplicate soybean genome.

Authors:  T Zhu; J M Schupp; A Oliphant; P Keim
Journal:  Mol Gen Genet       Date:  1994-09-28

8.  Replication of nonautonomous retroelements in soybean appears to be both recent and common.

Authors:  Adam Wawrzynski; Tom Ashfield; Nicolas W G Chen; Jafar Mammadov; Ashley Nguyen; Ram Podicheti; Steven B Cannon; Vincent Thareau; Carine Ameline-Torregrosa; Ethalinda Cannon; Ben Chacko; Arnaud Couloux; Anita Dalwani; Roxanne Denny; Shweta Deshpande; Ashley N Egan; Natasha Glover; Stacy Howell; Dan Ilut; Hongshing Lai; Sara Martin Del Campo; Michelle Metcalf; Majesta O'Bleness; Bernard E Pfeil; Milind B Ratnaparkhe; Sylvie Samain; Iryna Sanders; Béatrice Ségurens; Mireille Sévignac; Sue Sherman-Broyles; Dominic M Tucker; Jing Yi; Jeff J Doyle; Valérie Geffroy; Bruce A Roe; M A Saghai Maroof; Nevin D Young; Roger W Innes
Journal:  Plant Physiol       Date:  2008-10-24       Impact factor: 8.340

9.  Physical mapping of a region in the soybean (Glycine max) genome containing duplicated sequences.

Authors:  R P Funke; A Kolchinsky; P M Gresshoff
Journal:  Plant Mol Biol       Date:  1993-06       Impact factor: 4.076

10.  National Science Foundation-sponsored workshop report. Draft plan for soybean genomics.

Authors:  Gary Stacey; Lila Vodkin; Wayne A Parrott; Randy C Shoemaker
Journal:  Plant Physiol       Date:  2004-05       Impact factor: 8.340

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