Literature DB >> 15141067

National Science Foundation-sponsored workshop report. Draft plan for soybean genomics.

Gary Stacey1, Lila Vodkin, Wayne A Parrott, Randy C Shoemaker.   

Abstract

Recent efforts to coordinate and define a research strategy for soybean (Glycine max) genomics began with the establishment of a Soybean Genetics Executive Committee, which will serve as a communication focal point between the soybean research community and granting agencies. Secondly, a workshop was held to define a strategy to incorporate existing tools into a framework for advancing soybean genomics research. This workshop identified and ranked research priorities essential to making more informed decisions as to how to proceed with large scale sequencing and other genomics efforts. Most critical among these was the need to finalize a physical map and to obtain a better understanding of genome microstructure. Addressing these research needs will require pilot work on new technologies to demonstrate an ability to discriminate between recently duplicated regions in the soybean genome and pilot projects to analyze an adequate amount of random genome sequence to identify and catalog common repeats. The development of additional markers, reverse genetics tools, and bioinformatics is also necessary. Successful implementation of these goals will require close coordination among various working groups.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15141067      PMCID: PMC429333          DOI: 10.1104/pp.103.037903

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  49 in total

Review 1.  Genome relationships: the grass model in current research.

Authors:  K M Devos; M D Gale
Journal:  Plant Cell       Date:  2000-05       Impact factor: 11.277

2.  DNA variation in the basic chitinase locus (ChiB) region of the wild plant Arabidopsis thaliana.

Authors:  A Kawabe; N T Miyashita
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

Review 3.  Purine biosynthesis. Big in cell division, even bigger in nitrogen assimilation.

Authors:  Penelope M C Smith; Craig A Atkins
Journal:  Plant Physiol       Date:  2002-03       Impact factor: 8.340

Review 4.  Legume genomes: more than peas in a pod.

Authors:  Nevin Dale Young; Joann Mudge; T H Noel Ellis
Journal:  Curr Opin Plant Biol       Date:  2003-04       Impact factor: 7.834

5.  Long-distance signaling in nodulation directed by a CLAVATA1-like receptor kinase.

Authors:  Iain R Searle; Artem E Men; Titeki S Laniya; Diana M Buzas; Inaki Iturbe-Ormaetxe; Bernard J Carroll; Peter M Gresshoff
Journal:  Science       Date:  2002-10-31       Impact factor: 47.728

6.  DNA sequence organization in the soybean plant.

Authors:  R B Goldberg
Journal:  Biochem Genet       Date:  1978-02       Impact factor: 1.890

7.  Happy mapping: linkage mapping using a physical analogue of meiosis.

Authors:  P H Dear; P R Cook
Journal:  Nucleic Acids Res       Date:  1993-01-11       Impact factor: 16.971

8.  Transgene-induced RNA interference: a strategy for overcoming gene redundancy in polyploids to generate loss-of-function mutations.

Authors:  Richard J Lawrence; Craig S Pikaard
Journal:  Plant J       Date:  2003-10       Impact factor: 6.417

9.  The genomic relationship between Glycine max (L.) Merr. and G. soja Sieb. and Zucc. as revealed by pachytene chromosome analysis.

Authors:  R J Singh; T Hymowitz
Journal:  Theor Appl Genet       Date:  1988-11       Impact factor: 5.699

10.  Estimates of conserved microsynteny among the genomes of Glycine max, Medicago truncatula and Arabidopsis thaliana.

Authors:  H H Yan; J Mudge; D-J Kim; D Larsen; R C Shoemaker; D R Cook; N D Young
Journal:  Theor Appl Genet       Date:  2003-01-25       Impact factor: 5.699

View more
  20 in total

1.  A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis.

Authors:  Ik-Young Choi; David L Hyten; Lakshmi K Matukumalli; Qijian Song; Julian M Chaky; Charles V Quigley; Kevin Chase; K Gordon Lark; Robert S Reiter; Mun-Sup Yoon; Eun-Young Hwang; Seung-In Yi; Nevin D Young; Randy C Shoemaker; Curtis P van Tassell; James E Specht; Perry B Cregan
Journal:  Genetics       Date:  2007-03-04       Impact factor: 4.562

2.  A fluorescence in situ hybridization system for karyotyping soybean.

Authors:  Seth D Findley; Steven Cannon; Kranthi Varala; Jianchang Du; Jianxin Ma; Matthew E Hudson; James A Birchler; Gary Stacey
Journal:  Genetics       Date:  2010-04-26       Impact factor: 4.562

3.  The development of an efficient multipurpose bean pod mottle virus viral vector set for foreign gene expression and RNA silencing.

Authors:  Chunquan Zhang; Jeffrey D Bradshaw; Steven A Whitham; John H Hill
Journal:  Plant Physiol       Date:  2010-03-03       Impact factor: 8.340

4.  Towards normalization of soybean somatic embryo maturation.

Authors:  M A Schmidt; D M Tucker; E B Cahoon; W A Parrott
Journal:  Plant Cell Rep       Date:  2005-04-22       Impact factor: 4.570

5.  Establishment of a soybean (Glycine max Merr. L) transposon-based mutagenesis repository.

Authors:  Melanie Mathieu; Elizabeth K Winters; Fanming Kong; Jinrong Wan; Shaoxing Wang; Helene Eckert; Diane Luth; Margie Paz; Christopher Donovan; Zhanyuan Zhang; David Somers; Kan Wang; Henry Nguyen; Randy C Shoemaker; Gary Stacey; Tom Clemente
Journal:  Planta       Date:  2008-10-15       Impact factor: 4.116

6.  Dynamic genetic features of chromosomes revealed by comparison of soybean genetic and sequence-based physical maps.

Authors:  Woo Kyu Lee; Namshin Kim; Jiwoong Kim; Jung-Kyung Moon; Namhee Jeong; Ik-Young Choi; Sang Cheol Kim; Won-Hyong Chung; Hong Sig Kim; Suk-Ha Lee; Soon-Chun Jeong
Journal:  Theor Appl Genet       Date:  2013-01-10       Impact factor: 5.699

7.  Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.).

Authors:  Jungmin Ha; Brian Abernathy; William Nelson; David Grant; Xiaolei Wu; Henry T Nguyen; Gary Stacey; Yeisoo Yu; Rod A Wing; Randy C Shoemaker; Scott A Jackson
Journal:  G3 (Bethesda)       Date:  2012-03-01       Impact factor: 3.154

8.  An integrated high-density linkage map of soybean with RFLP, SSR, STS, and AFLP markers using A single F2 population.

Authors:  Zhengjun Xia; Yasutaka Tsubokura; Masako Hoshi; Masayoshi Hanawa; Chizuru Yano; Kayo Okamura; Talaat A Ahmed; Toyoaki Anai; Satoshi Watanabe; Masaki Hayashi; Takashi Kawai; Khwaja G Hossain; Hirokazu Masaki; Kazumi Asai; Naoki Yamanaka; Nakao Kubo; Koh-ichi Kadowaki; Yoshiaki Nagamura; Masahiro Yano; Takuji Sasaki; Kyuya Harada
Journal:  DNA Res       Date:  2008-01-11       Impact factor: 4.458

9.  Local inhibition of nitrogen fixation and nodule metabolism in drought-stressed soybean.

Authors:  Erena Gil-Quintana; Estíbaliz Larrainzar; Amaia Seminario; Juan Luis Díaz-Leal; Josefa M Alamillo; Manuel Pineda; Cesar Arrese-Igor; Stefanie Wienkoop; Esther M González
Journal:  J Exp Bot       Date:  2013-04-11       Impact factor: 6.992

10.  Recent advances in soybean transformation and their application to molecular breeding and genomic analysis.

Authors:  Tetsuya Yamada; Kyoko Takagi; Masao Ishimoto
Journal:  Breed Sci       Date:  2012-02-04       Impact factor: 2.086

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.