Literature DB >> 5288243

Prediction of RNA secondary structure.

C Delisi, D M Crothers.   

Abstract

Calculations of the free energy required to close single-strand loops by formation of a base pair in double-helical nucleic acids are reported. These results can be used to estimate the free energy of particular secondary structures for a given RNA molecule under conditions of high-salt concentration.

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Year:  1971        PMID： 5288243      PMCID： PMC389500          DOI： 10.1073/pnas.68.11.2682

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  6 in total

1.  A source for the special catalytic power of enzymes: orbital steering.

Authors:  D R Storm; D E Koshland
Journal:  Proc Natl Acad Sci U S A       Date:  1970-06       Impact factor: 11.205

2.  THE ACCOMMODATION OF NONCOMPLEMENTARY BASES IN HELICAL POLYRIBONUCLEOTIDES AND DEOXYRIBONUCLEIC ACIDS.

Authors:  J R Fresco; B M Alberts
Journal:  Proc Natl Acad Sci U S A       Date:  1960-03       Impact factor: 11.205

3.  Estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; O C Uhlenbeck; M D Levine
Journal:  Nature       Date:  1971-04-09       Impact factor: 49.962

4.  Polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA.

Authors:  J A Steitz
Journal:  Nature       Date:  1969-12-06       Impact factor: 49.962

5.  Conformation of polyribouridylic acid in solution.

Authors:  L D Inners; G Felsenfeld
Journal:  J Mol Biol       Date:  1970-06-14       Impact factor: 5.469

6.  Helix formation by dAT oligomers. I. Hairpin and straight-chain helices.

Authors:  I E Scheffler; E L Elson; R L Baldwin
Journal:  J Mol Biol       Date:  1968-09-28       Impact factor: 5.469
  6 in total
  24 in total

1.  Computer method for predicting the secondary structure of single-stranded RNA.

Authors:  G M Studnicka; G M Rahn; I W Cummings; W A Salser
Journal:  Nucleic Acids Res       Date:  1978-09       Impact factor: 16.971

2.  Mfold web server for nucleic acid folding and hybridization prediction.

Authors:  Michael Zuker
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Method for predicting RNA secondary structure.

Authors:  J M Pipas; J E McMahon
Journal:  Proc Natl Acad Sci U S A       Date:  1975-06       Impact factor: 11.205

4.  Moments of the End-to-End Vector of a Chain Molecule, Its Persistence and Distribution.

Authors:  P J Flory
Journal:  Proc Natl Acad Sci U S A       Date:  1973-06       Impact factor: 11.205

5.  Considerations regarding the regulation of gene transcription and messenger translation.

Authors:  W M Fitch
Journal:  J Mol Evol       Date:  1972-06       Impact factor: 2.395

6.  Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding.

Authors:  A E Walter; D H Turner; J Kim; M H Lyttle; P Müller; D H Mathews; M Zuker
Journal:  Proc Natl Acad Sci U S A       Date:  1994-09-27       Impact factor: 11.205

7.  The ethical scientist: An old-fashioned view.

Authors:  Ignacio Tinoco
Journal:  Biopolymers       Date:  2015-08       Impact factor: 2.505

8.  Thermal denaturation of mesophilic and thermophilic 5S ribonucleic acids.

Authors:  F Varricchio; C A Marotta
Journal:  J Bacteriol       Date:  1976-03       Impact factor: 3.490

9.  Inverse folding of RNA pseudoknot structures.

Authors:  James Zm Gao; Linda Ym Li; Christian M Reidys
Journal:  Algorithms Mol Biol       Date:  2010-06-23       Impact factor: 1.405

10.  Sequence-structure relations of pseudoknot RNA.

Authors:  Fenix W D Huang; Linda Y M Li; Christian M Reidys
Journal:  BMC Bioinformatics       Date:  2009-01-30       Impact factor: 3.169
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