Literature DB >> 16591843

A source for the special catalytic power of enzymes: orbital steering.

D R Storm1, D E Koshland.   

Abstract

The velocities of acid catalyzed esterification and gamma-lactonizations were studied to test the sensitivity of a chemical reaction to the orientation of the reacting atoms. Variation in orientation of the attacking oxygen atom relative to the carbon atom of the carboxylic acid was achieved by using bicyclic ring systems to limit the conformational mobility of the gamma-hydroxy acids. Factors as high as 2 x 10(4) were observed for the acceleration of a reaction due to this "orientation factor" even after corrections for proximity and torsional strain have been made. The orientation factor is related to the shape of the electron orbitals and must have an angular preference far greater than previously estimated. Such sensitivity to orientation would provide factors large enough to explain the gap in our understanding of enzyme catalysis. It is suggested that the catalytic efficiency of enzymes depends on their ability not only to juxtapose the reacting atoms but also to "steer" their orbitals along a path which takes advantage of this strong directional preference.

Entities:  

Year:  1970        PMID: 16591843      PMCID: PMC283065          DOI: 10.1073/pnas.66.2.445

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  4 in total

1.  Configuration of carbohydrates, hydroxy-acids and amino-acids; stereochemical standards of configuration.

Authors:  P BREWSTER; E D HUGHES; C K INGOLD; P A D S RAO
Journal:  Nature       Date:  1950-07-29       Impact factor: 49.962

Review 2.  The catalytic and regulatory properties of enzymes.

Authors:  D E Koshland; K E Neet
Journal:  Annu Rev Biochem       Date:  1968       Impact factor: 23.643

3.  Properties of thiol-subtilisin. The consequences of converting the active serine residue to cysteine in a serine protease.

Authors:  K E Neet; A Nanci; D E Koshland
Journal:  J Biol Chem       Date:  1968-12-25       Impact factor: 5.157

Review 4.  Chemical approaches to the properties of active sites of enzymes.

Authors:  B L Vallee; J F Riordan
Journal:  Annu Rev Biochem       Date:  1969       Impact factor: 23.643

  4 in total
  24 in total

1.  On the concept of orbital steering in catalytic reactions.

Authors:  T C Bruice; A Brown; D O Harris
Journal:  Proc Natl Acad Sci U S A       Date:  1971-03       Impact factor: 11.205

2.  The far reaches of enzymology.

Authors:  Jesse G Zalatan; Daniel Herschlag
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

3.  Determining the catalytic role of remote substrate binding interactions in ketosteroid isomerase.

Authors:  Jason P Schwans; Daniel A Kraut; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-12       Impact factor: 11.205

4.  Transition state structure of arginine kinase: implications for catalysis of bimolecular reactions.

Authors:  G Zhou; T Somasundaram; E Blanc; G Parthasarathy; W R Ellington; M S Chapman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

Review 5.  On the failure of de novo-designed peptides as biocatalysts.

Authors:  M J Corey; E Corey
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

6.  Computer simulations of enzyme catalysis: finding out what has been optimized by evolution.

Authors:  A Warshel; J Florián
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

Review 7.  Protein structure and properties.

Authors:  L Butler
Journal:  J Am Oil Chem Soc       Date:  1971-03       Impact factor: 1.849

8.  Entropic contributions to rate accelerations in enzymic and intramolecular reactions and the chelate effect.

Authors:  M I Page; W P Jencks
Journal:  Proc Natl Acad Sci U S A       Date:  1971-08       Impact factor: 11.205

9.  -galactosidase-catalysed hydrolysis of -D-galactopyranosyl azide.

Authors:  M L Sinnott
Journal:  Biochem J       Date:  1971-12       Impact factor: 3.857

10.  Ground state destabilization from a positioned general base in the ketosteroid isomerase active site.

Authors:  Eliza A Ruben; Jason P Schwans; Matthew Sonnett; Aditya Natarajan; Ana Gonzalez; Yingssu Tsai; Daniel Herschlag
Journal:  Biochemistry       Date:  2013-01-30       Impact factor: 3.162

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