Literature DB >> 4530293

The three dimensional structure of the lysozyme from bacteriophage T4.

B W Matthews, S J Remington.   

Abstract

The three dimensional structure of the lysozyme from bacteriophage T4 has been determined from a 2.5 A resolution electron density map. About 60% of the molecule is in a helical conformation and there is one region consisting of antiparallel beta-structure. The polypeptide backbone folds into two distinct lobes linked in part by a long helix. In the region between the two lobes, there is a cleft which deepens into a hole or cavity, about 6-8 A in diameter, extending from one side of the molecule to the other. This opening is closed off by side chains which extend to within 3-5 A of each other. A number of mutant lysozymes in which residues in the vicinity of the opening are modified have markedly reduced catalytic activity, suggesting that this region of the molecule may be catalytically important. The three dimensional structure of T4 phage lysozyme is quite different from that of hen egg-white lysozyme although it is not clear at this time whether or not the mechanisms of catalysis of the respective enzymes are related.

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Year:  1974        PMID: 4530293      PMCID: PMC434353          DOI: 10.1073/pnas.71.10.4178

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Three-dimensional structure of tosyl-alpha-chymotrypsin.

Authors:  B W Matthews; P B Sigler; R Henderson; D M Blow
Journal:  Nature       Date:  1967-05-13       Impact factor: 49.962

2.  On the conformation of the hen egg-white lysozyme molecule.

Authors:  C C Blake; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

3.  Crystallographic studies of the activity of hen egg-white lysozyme.

Authors:  C C Blake; L N Johnson; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

4.  Complete primary structure of phage lysozyme from Escherichia coli T4.

Authors:  A Tsugita; M Inouye
Journal:  J Mol Biol       Date:  1968-10-14       Impact factor: 5.469

5.  Frameshift mutation in the lysozyme gene of bacteriophage T4: demonstration of the insertion of five bases, and a summary of in vivo codons and lysozyme activities.

Authors:  Y Ocada; S Amagase; A Tsugita
Journal:  J Mol Biol       Date:  1970-12-14       Impact factor: 5.469

6.  Role of a buried acid group in the mechanism of action of chymotrypsin.

Authors:  D M Blow; J J Birktoft; B S Hartley
Journal:  Nature       Date:  1969-01-25       Impact factor: 49.962

7.  Structure of subtilisin BPN' at 2.5 angström resolution.

Authors:  C S Wright; R A Alden; J Kraut
Journal:  Nature       Date:  1969-01-18       Impact factor: 49.962

8.  Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday.

Authors:  G Streisinger; Y Okada; J Emrich; J Newton; A Tsugita; E Terzaghi; M Inouye
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1966

9.  Structure of hen egg-white lysozyme. A three-dimensional Fourier synthesis at 2 Angstrom resolution.

Authors:  C C Blake; D F Koenig; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Nature       Date:  1965-05-22       Impact factor: 49.962

10.  Sequence similarities between hen egg-white and T4 phage lysozymes.

Authors:  P Dunnill
Journal:  Nature       Date:  1967-08-05       Impact factor: 49.962

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  31 in total

1.  Theoretical studies of the response of a protein structure to cavity-creating mutations.

Authors:  J Lee; K Lee; S Shin
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  Distributions of experimental protein structures on coarse-grained free energy landscapes.

Authors:  Kannan Sankar; Jie Liu; Yuan Wang; Robert L Jernigan
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

Review 3.  A backbone-based theory of protein folding.

Authors:  George D Rose; Patrick J Fleming; Jayanth R Banavar; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

4.  Structure of a stabilizing disulfide bridge mutant that closes the active-site cleft of T4 lysozyme.

Authors:  R H Jacobson; M Matsumura; H R Faber; B W Matthews
Journal:  Protein Sci       Date:  1992-01       Impact factor: 6.725

Review 5.  Lessons from the lysozyme of phage T4.

Authors:  Walter A Baase; Lijun Liu; Dale E Tronrud; Brian W Matthews
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

6.  TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites.

Authors:  A C Wallace; N Borkakoti; J M Thornton
Journal:  Protein Sci       Date:  1997-11       Impact factor: 6.725

7.  Direct observation of T4 lysozyme hinge-bending motion by fluorescence correlation spectroscopy.

Authors:  Robel B Yirdaw; Hassane S McHaourab
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

Review 8.  Biophysical highlights from 54 years of macromolecular crystallography.

Authors:  Jane S Richardson; David C Richardson
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

9.  Single-Molecule Chemo-Mechanical Spectroscopy Provides Structural Identity of Folding Intermediates.

Authors:  Hesam N Motlagh; Dmitri Toptygin; Christian M Kaiser; Vincent J Hilser
Journal:  Biophys J       Date:  2016-03-29       Impact factor: 4.033

10.  Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding.

Authors:  B W Matthews; H Nicholson; W J Becktel
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

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