Literature DB >> 1304882

Structure of a stabilizing disulfide bridge mutant that closes the active-site cleft of T4 lysozyme.

R H Jacobson1, M Matsumura, H R Faber, B W Matthews.   

Abstract

The engineered disulfide bridge between residues 21 and 142 of phage T4 lysozyme spans the active-site cleft and can be used as a switch to control the activity of the enzyme (Matsumura, M. & Matthews, B.W., 1989, Science 243, 792-794). In the oxidized form the disulfide increases the melting temperature of the protein by 11 degrees C at pH 2. The crystal structure of this mutant lysozyme has been determined in both the reduced and oxidized forms. In the reduced form, the crystal structure of the mutant is shown to be extremely similar to that of wild type. In the oxidized form, however, the formation of the disulfide bridge causes the alpha-carbons of Cys 21 and Cys 142, on opposite sides of the active-site cleft, to move toward each other by 2.5 A. In association with this movement, the amino-terminal domain of the protein undergoes a rigid-body rotation of 5.1 degrees relative to the carboxy-terminal domain. This rotation occurs about an axis passing through the junction of the amino-terminal and carboxy-terminal domains and is also close to the axis that best fits the apparent thermal motion of the amino-terminal domain seen previously in crystals of wild-type lysozyme. Even though the engineered Cys 21-Cys 142 disulfide links together the amino-terminal and carboxy-terminal domains of T4 lysozyme, it does not reduce the apparent mobility of the one domain relative to the other. The pronounced "hinge-bending" mobility of the amino-terminal domain that is suggested by the crystallographic thermal parameters of wild-type lysozyme persists in the oxidized (and reduced) mutant structures. In the immediate vicinity of the introduced disulfide bridge the mutant structure is more mobile (or disordered) than wild type, so much so that the exact conformation of Cys 21 remains obscure. As with the previously described disulfide bridge between residues 9 and 164 of T4 lysozyme (Pjura, P.E., Matsumura, M., Wozniak, J.A., & Matthews, B.W., 1990, Biochemistry 29, 2592-2598), the engineered cross-link substantially enhances the stability of the protein without making the folded structure more rigid.

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Year:  1992        PMID: 1304882      PMCID: PMC2142079          DOI: 10.1002/pro.5560010106

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  18 in total

1.  A mutant T4 lysozyme displays five different crystal conformations.

Authors:  H R Faber; B W Matthews
Journal:  Nature       Date:  1990-11-15       Impact factor: 49.962

2.  Crystal structures of subtilisin BPN' variants containing disulfide bonds and cavities: concerted structural rearrangements induced by mutagenesis.

Authors:  B Katz; A A Kossiakoff
Journal:  Proteins       Date:  1990

3.  Control of enzyme activity by an engineered disulfide bond.

Authors:  M Matsumura; B W Matthews
Journal:  Science       Date:  1989-02-10       Impact factor: 47.728

4.  Stabilization of phage T4 lysozyme by engineered disulfide bonds.

Authors:  M Matsumura; W J Becktel; M Levitt; B W Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

5.  Ubiquitin function studied by disulfide engineering.

Authors:  D J Ecker; T R Butt; J Marsh; E Sternberg; A Shatzman; J S Dixon; P L Weber; S T Crooke
Journal:  J Biol Chem       Date:  1989-01-25       Impact factor: 5.157

6.  Disulfide bond engineered into T4 lysozyme: stabilization of the protein toward thermal inactivation.

Authors:  L J Perry; R Wetzel
Journal:  Science       Date:  1984-11-02       Impact factor: 47.728

7.  Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme.

Authors:  S Daopin; T Alber; W A Baase; J A Wozniak; B W Matthews
Journal:  J Mol Biol       Date:  1991-09-20       Impact factor: 5.469

8.  Effect of an engineered disulfide bond on the folding of T4 lysozyme at low temperatures.

Authors:  W D Anderson; A L Fink; L J Perry; R Wetzel
Journal:  Biochemistry       Date:  1990-04-03       Impact factor: 3.162

9.  Structure of a thermostable disulfide-bridge mutant of phage T4 lysozyme shows that an engineered cross-link in a flexible region does not increase the rigidity of the folded protein.

Authors:  P E Pjura; M Matsumura; J A Wozniak; B W Matthews
Journal:  Biochemistry       Date:  1990-03-13       Impact factor: 3.162

10.  Conformational stability and activity of ribonuclease T1 with zero, one, and two intact disulfide bonds.

Authors:  C N Pace; G R Grimsley; J A Thomson; B J Barnett
Journal:  J Biol Chem       Date:  1988-08-25       Impact factor: 5.157

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  14 in total

1.  The effects of disulfide bonds on the denatured state of barnase.

Authors:  J Clarke; A M Hounslow; C J Bond; A R Fersht; V Daggett
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

2.  Trapping a 96 degrees domain rotation in two distinct conformations by engineered disulfide bridges.

Authors:  Robert Schultz-Heienbrok; Timm Maier; Norbert Sträter
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

Review 3.  Looking at proteins: representations, folding, packing, and design. Biophysical Society National Lecture, 1992.

Authors:  J S Richardson; D C Richardson; N B Tweedy; K M Gernert; T P Quinn; M H Hecht; B W Erickson; Y Yan; R D McClain; M E Donlan
Journal:  Biophys J       Date:  1992-11       Impact factor: 4.033

4.  Engineered disulfide bonds restore chaperone-like function of DJ-1 mutants linked to familial Parkinson's disease.

Authors:  Todd Logan; Lindsay Clark; Soumya S Ray
Journal:  Biochemistry       Date:  2010-07-13       Impact factor: 3.162

5.  Structural determinants of nitroxide motion in spin-labeled proteins: solvent-exposed sites in helix B of T4 lysozyme.

Authors:  Zhefeng Guo; Duilio Cascio; Kálmán Hideg; Wayne L Hubbell
Journal:  Protein Sci       Date:  2007-12-20       Impact factor: 6.725

6.  Structural determinants of nitroxide motion in spin-labeled proteins: tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme.

Authors:  Zhefeng Guo; Duilio Cascio; Kálmán Hideg; Támás Kálái; Wayne L Hubbell
Journal:  Protein Sci       Date:  2007-05-01       Impact factor: 6.725

Review 7.  Lessons from the lysozyme of phage T4.

Authors:  Walter A Baase; Lijun Liu; Dale E Tronrud; Brian W Matthews
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

Review 8.  Biophysical highlights from 54 years of macromolecular crystallography.

Authors:  Jane S Richardson; David C Richardson
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

9.  Engineering of a thermo-alkali-stable lipase from Rhizopus chinensis by rational design of a buried disulfide bond and combinatorial mutagenesis.

Authors:  Rui Wang; Shang Wang; Yan Xu; Xiaowei Yu
Journal:  J Ind Microbiol Biotechnol       Date:  2020-10-18       Impact factor: 3.346

Review 10.  Prediction and analysis of structure, stability and unfolding of thermolysin-like proteases.

Authors:  G Vriend; V Eijsink
Journal:  J Comput Aided Mol Des       Date:  1993-08       Impact factor: 3.686

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