Literature DB >> 450714

Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones.

D Rhodes.   

Abstract

In this paper we describe a detailed investigation of the reconstitution of nucleosome cores from poly (dA-dT) and the octamer of histones. We also attempted the reconstitution from the copolymers poly dA.poly dT, poly dG.poly dC and poly (dG-dC). The repeat of the reconstituted chromatin fibre is discussed. The micrococcal nuclease released poly (dA-dT) core particle is found to contain a considerably narrower DNA size distribution that of the native random DNA nucleosome core (12). In addition we have succeeded in obtaining small crystals of the poly (dA-dT) nucleosome core. The DNAase I digestion pattern of the poly (dA-dT) containing nucleosome core is presented. The periodicity of DNAase I cutting sites is found to be about 10.5 bases and is similar to that of the native nucleosome core (12, 13).

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Year:  1979        PMID: 450714      PMCID: PMC327812          DOI: 10.1093/nar/6.5.1805

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  23 in total

1.  The same amount of DNA is organized in in vitro-assembled nucleosomes irrespective of the origin of the histones.

Authors:  C Spadafora; P Oudet; P Chambon
Journal:  Nucleic Acids Res       Date:  1978-10       Impact factor: 16.971

2.  The nucleosome core protein.

Authors:  J O Thomas; P J Butler
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

Review 3.  The role of DNA structure in genetic regulation.

Authors:  R D Wells; R W Blakesley; S C Hardies; G T Horn; J E Larson; E Selsing; J F Burd; H W Chan; J B Dodgson; K F Jensen; I F Nes; R M Wartell
Journal:  CRC Crit Rev Biochem       Date:  1977

Review 4.  Structure of chromatin.

Authors:  R D Kornberg
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

5.  Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: evidence for a DNA superhelix.

Authors:  L C Lutter
Journal:  J Mol Biol       Date:  1978-09-15       Impact factor: 5.469

6.  DNAase I, DNAase II and staphylococcal nuclease cut at different, yet symmetrically located, sites in the nucleosome core.

Authors:  B Sollner-Webb; W Melchior; G Felsenfeld
Journal:  Cell       Date:  1978-07       Impact factor: 41.582

7.  Closely spaced nucleosome cores in reconstituted histone.DNA complexes and histone-H1-depleted chromatin.

Authors:  M Steinmetz; R E Streeck; H G Zachau
Journal:  Eur J Biochem       Date:  1978-02

8.  Precise location of DNase I cutting sites in the nucleosome core determined by high resolution gel electrophoresis.

Authors:  L C Lutter
Journal:  Nucleic Acids Res       Date:  1979-01       Impact factor: 16.971

9.  Characterization of the octamer of histones free in solution.

Authors:  J O Thomas; P J Butler
Journal:  J Mol Biol       Date:  1977-11       Impact factor: 5.469

10.  Assembly of SV40 chromatin in a cell-free system from Xenopus eggs.

Authors:  R A Laskey; A D Mills; N R Morris
Journal:  Cell       Date:  1977-02       Impact factor: 41.582

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  44 in total

1.  Separate domains in E1 and E2 proteins serve architectural and productive roles for cooperative DNA binding.

Authors:  E Gillitzer; G Chen; A Stenlund
Journal:  EMBO J       Date:  2000-06-15       Impact factor: 11.598

2.  Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo.

Authors:  B Suter; G Schnappauf; F Thoma
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

3.  Nucleosome depletion alters the chromatin structure of Saccharomyces cerevisiae centromeres.

Authors:  M J Saunders; E Yeh; M Grunstein; K Bloom
Journal:  Mol Cell Biol       Date:  1990-11       Impact factor: 4.272

Review 4.  Nucleosome structural studies.

Authors:  Song Tan; Curt A Davey
Journal:  Curr Opin Struct Biol       Date:  2010-12-19       Impact factor: 6.809

5.  Influence of the sequence-dependent flexure of DNA on transcription in E. coli.

Authors:  C M Collis; P L Molloy; G W Both; H R Drew
Journal:  Nucleic Acids Res       Date:  1989-11-25       Impact factor: 16.971

6.  Wrapping of genomic polydA.polydT tracts around nucleosome core particles.

Authors:  K R Fox
Journal:  Nucleic Acids Res       Date:  1992-03-25       Impact factor: 16.971

7.  DNA sequence-directed organization of chromatin: structure-based computational analysis of nucleosome-binding sequences.

Authors:  Sreekala Balasubramanian; Fei Xu; Wilma K Olson
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

8.  DNA sequence-dependent deformability deduced from protein-DNA crystal complexes.

Authors:  W K Olson; A A Gorin; X J Lu; L M Hock; V B Zhurkin
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-15       Impact factor: 11.205

9.  Unique poly(dA).poly(dT) B'-conformation in cellular and synthetic DNAs.

Authors:  S Diekmann; D A Zarling
Journal:  Nucleic Acids Res       Date:  1987-08-11       Impact factor: 16.971

10.  Two nuclear DNA binding proteins of Dictyostelium discoideum with a high affinity for poly(dA)-poly(dT).

Authors:  H Garreau; J G Williams
Journal:  Nucleic Acids Res       Date:  1983-12-10       Impact factor: 16.971

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