Literature DB >> 4084592

Poly(d2NH2A-dT): two-dimensional NMR shows a B to A conversion in high salt.

B Borah, J S Cohen, F B Howard, H T Miles.   

Abstract

Poly(d2NH2A-dT) forms a structure in high salt that is clearly distinct from the B form present in low salt. Two-dimensional nuclear Overhauser effect (2D NOE) NMR spectra establish that the conformation of the high-salt form is not Z. Correlations of observed cross peaks in the 2D NOE spectra and estimated interproton distances of the common DNA conformations are consistent only with an A form or closely related structure. This interpretation is also consistent with the negative circular dichroic band observed in the high-salt form of poly(d2NH2A-dT) and in A-form ribohomopolymer helices containing 2NH2A.

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Year:  1985        PMID: 4084592     DOI: 10.1021/bi00346a064

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  DNA containing the base analogue 2-aminoadenine: preparation, use as hybridization probes and cleavage by restriction endonucleases.

Authors:  A Chollet; E Kawashima
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

2.  Harmonic vibrations and thermodynamic stability of a DNA oligomer in monovalent salt solution.

Authors:  A E García; D M Soumpasis
Journal:  Proc Natl Acad Sci U S A       Date:  1989-05       Impact factor: 11.205

3.  Thermodynamic studies of base pairing involving 2,6-diaminopurine.

Authors:  C Cheong; I Tinoco; A Chollet
Journal:  Nucleic Acids Res       Date:  1988-06-10       Impact factor: 16.971

4.  Conformation of the synthetic DNA poly(amino2dA-dT) duplex in high-salt and aqueous alcohol solutions.

Authors:  M Vorlícková; J Sági; A Szabolcs; A Szemzö; L Otvös; J Kypr
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

5.  Conformational transitions of alternating purine-pyrimidine DNAs in perchlorate ethanol solutions.

Authors:  M Vorlícková
Journal:  Biophys J       Date:  1995-11       Impact factor: 4.033

6.  Comparative NMR analysis of the decadeoxynucleotide d-(GCATTAATGC)2 and an analogue containing 2-aminoadenine.

Authors:  W J Chazin; M Rance; A Chollet; W Leupin
Journal:  Nucleic Acids Res       Date:  1991-10-25       Impact factor: 16.971

7.  The Cucurbit[7]Uril-Based Supramolecular Chemistry for Reversible B/Z-DNA Transition.

Authors:  Shao-Ru Wang; Jia-Qi Wang; Guo-Hua Xu; Lai Wei; Bo-Shi Fu; Ling-Yu Wu; Yan-Yan Song; Xi-Ran Yang; Conggang Li; Si-Min Liu; Xiang Zhou
Journal:  Adv Sci (Weinh)       Date:  2018-05-15       Impact factor: 16.806

8.  A Chemical Approach to Introduce 2,6-Diaminopurine and 2-Aminoadenine Conjugates into Oligonucleotides without Need for Protecting Groups.

Authors:  Mimouna Madaoui; Dhrubajyoti Datta; Kelly Wassarman; Ivan Zlatev; Martin Egli; Bruce S Ross; Muthiah Manoharan
Journal:  Org Lett       Date:  2022-08-16       Impact factor: 6.072

Review 9.  Circular dichroism and conformational polymorphism of DNA.

Authors:  Jaroslav Kypr; Iva Kejnovská; Daniel Renciuk; Michaela Vorlícková
Journal:  Nucleic Acids Res       Date:  2009-02-03       Impact factor: 16.971

  9 in total

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