Literature DB >> 4074323

Physicochemical studies on turnip-yellow-mosaic virus. Homogeneity, relative molecular masses, hydrodynamic radii and concentration-dependence of parameters in non-dissociating solvents.

S E Harding, P Johnson.   

Abstract

Turnip-yellow-mosaic virus, with its stable, highly spherical and monodisperse character, was chosen as a suitable model substance with which to test hydrodynamic theories of transport. Sedimentation coefficients, diffusion coefficients (obtained through photon correlation spectroscopy) and viscosities were measured accurately as a function of concentration in well-defined and nearly neutral buffer systems. Ancillary information was also obtained from very-low-speed sedimentation-equilibrium experiments. The coefficients expressing the variation in sedimentation and diffusion coefficients with weight concentration were obtained, and by combination with other data it was possible to avoid assumptions concerning solvation and transform such regression coefficients into the form appropriate to volume fractions. Some measure of support for Batchelor's [(1972) J. Fluid Mech. 52, 245-268] calculations was thus obtained, but over most of the pH range the coefficients were significantly smaller than those calculated from his theory. It seems likely that electrostatic interactions are responsible for the discrepancies. Hydrodynamic radii (from diffusion coefficients) were in very fair agreement with those calculated from the thermodynamic excluded-volume term, but were higher than indicated by electron microscopy and X-ray diffraction, a discrepancy ascribable to solvation.

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Year:  1985        PMID: 4074323      PMCID: PMC1152786          DOI: 10.1042/bj2310549

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  15 in total

1.  Protein components from turnip yellow mosaic virus.

Authors:  J M KAPER
Journal:  Nature       Date:  1960-04-16       Impact factor: 49.962

2.  Analysis of non-ideal behavior in concentrated hemoglobin solutions.

Authors:  P D Ross; A P Minton
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

3.  Characterization of proteins by sedimentation equilibrium in the analytical ultracentrifuge.

Authors:  D C Teller
Journal:  Methods Enzymol       Date:  1973       Impact factor: 1.600

4.  On the estimation of the shape of macromolecules from sedimentation and viscosity measurements.

Authors:  J M Creeth; C G Knight
Journal:  Biochim Biophys Acta       Date:  1965-07-22

5.  Ultracentrifugal studies of human luteinizing hormone and its subunits: dependence on protein concentration and ionic strength.

Authors:  A Nureddin; P Johnson
Journal:  Biochemistry       Date:  1977-04-19       Impact factor: 3.162

6.  A simple test for macromolecular heterogeneity in the analytical ultracentrifuge.

Authors:  J M Creeth; S E Harding
Journal:  Biochem J       Date:  1982-09-01       Impact factor: 3.857

7.  Some observations on a new type of point average molecular weight.

Authors:  J M Creeth; S E Harding
Journal:  J Biochem Biophys Methods       Date:  1982-12

8.  The indefinite self-association of lysozyme: consideration of composition-dependent activity coefficients.

Authors:  P R Wills; L W Nichol; R J Siezen
Journal:  Biophys Chem       Date:  1980-02       Impact factor: 2.352

9.  Arrangement of protein subunits and the distribution of nucleic acid in turnip yellow mosaic virus. II. Electron microscopic studies.

Authors:  J T Finch; A Klug
Journal:  J Mol Biol       Date:  1966-01       Impact factor: 5.469

10.  The ribonucleic acid content of turnip yellow mosaic virus.

Authors:  J M Kaper; E C Litjens
Journal:  Biochemistry       Date:  1966-05       Impact factor: 3.162

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  14 in total

1.  Novel size-independent modeling of the dilute solution conformation of the immunoglobulin IgG Fab' domain using SOLPRO and ELLIPS.

Authors:  B Carrasco; J G de la Torre; O Byron; D King; C Walters; S Jones; S E Harding
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

2.  Non-ideality by sedimentation velocity of halophilic malate dehydrogenase in complex solvents.

Authors:  A Solovyova; P Schuck; L Costenaro; C Ebel
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

3.  Comparison of Quasielastic Light Scattering and Laser Diffractometry as Nondestructive Probes into the Structure of Bacillus sphaericus Spores Produced at Different Temperatures.

Authors:  A D Molina-Garcia; L A de Pieri; I Ludlow; W M Waites; J G de la Torre; S E Harding
Journal:  Appl Environ Microbiol       Date:  1996-05       Impact factor: 4.792

Review 4.  Foreword to 'Quantitative and analytical relations in biochemistry'-a special issue in honour of Donald J. Winzor's 80th birthday.

Authors:  Damien Hall; Stephen E Harding
Journal:  Biophys Rev       Date:  2016-11-04

5.  AUC measurements of diffusion coefficients of monoclonal antibodies in the presence of human serum proteins.

Authors:  Robert T Wright; David Hayes; Peter J Sherwood; Walter F Stafford; John J Correia
Journal:  Eur Biophys J       Date:  2018-07-12       Impact factor: 1.733

6.  HullRad: Fast Calculations of Folded and Disordered Protein and Nucleic Acid Hydrodynamic Properties.

Authors:  Patrick J Fleming; Karen G Fleming
Journal:  Biophys J       Date:  2018-02-27       Impact factor: 4.033

7.  The concentration-dependence of macromolecular parameters.

Authors:  S E Harding; P Johnson
Journal:  Biochem J       Date:  1985-11-01       Impact factor: 3.857

8.  Effect of coat protein mutations in bacteriophage fd studied by sedimentation analysis.

Authors:  A D Molina-Garcia; S E Harding; F G Diaz; J G de la Torre; D Rowitch; R N Perham
Journal:  Biophys J       Date:  1992-11       Impact factor: 4.033

9.  Development of a Specific Diagnostic System for Detecting Turnip Yellow Mosaic Virus from Chinese Cabbage in Korea.

Authors:  S Lee; J Y Rho
Journal:  Indian J Microbiol       Date:  2015-11-04       Impact factor: 2.461

10.  SEDFIT-MSTAR: molecular weight and molecular weight distribution analysis of polymers by sedimentation equilibrium in the ultracentrifuge.

Authors:  Peter Schuck; Richard B Gillis; Tabot M D Besong; Fahad Almutairi; Gary G Adams; Arthur J Rowe; Stephen E Harding
Journal:  Analyst       Date:  2013-11-18       Impact factor: 4.616

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