Literature DB >> 4004816

Estimation of the initial velocity of enzyme-catalysed reactions by non-linear regression analysis of progress curves.

R G Duggleby.   

Abstract

Most methods for studying the kinetic properties of an enzyme involve the determination of initial velocities. When the reaction progress curve shows significant curvature due to depletion of the substrate, accumulation of inhibitory products or instability of the enzyme, estimation of the initial velocity is a subjective and inexact process. Two methods have been suggested [Cornish-Bowden (1975) Biochem. J. 144, 305-312; Boeker (1982) Biochem J. 203, 117-123] that attempt to eliminate this subjective element. The present study offers a third alternative, which is based on fitting a reparameterized form of the integrated Michaelis-Menten equation to the progress curves by non-linear regression. This method yields estimates and standard errors of the initial velocity and of the time to reach 50% reaction. No prior knowledge of the apparent product concentration at zero time or infinite time is required, since both of these quantities are also estimated from the data. It is shown that this method yields reliable estimates of the initial velocity under a wide range of circumstances, including those where the two previously published methods perform poorly.

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Year:  1985        PMID: 4004816      PMCID: PMC1144952          DOI: 10.1042/bj2280055

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  8 in total

1.  The use of the direct linear plot for determining initial velocities.

Authors:  A Cornish-Bowden
Journal:  Biochem J       Date:  1975-08       Impact factor: 3.857

2.  The analysis of progress curves for enzyme-catalysed reactions by non-linear regression.

Authors:  R G Duggleby; J F Morrison
Journal:  Biochim Biophys Acta       Date:  1977-04-12

3.  A simple test for inactivation of an enzyme during assay.

Authors:  M J Selwyn
Journal:  Biochim Biophys Acta       Date:  1965-07-29

4.  Improved non-parametric statistical methods for the estimation of Michaelis-Menten kinetic parameters by the direct linear plot.

Authors:  W R Porter; W F Trager
Journal:  Biochem J       Date:  1977-02-01       Impact factor: 3.857

5.  Regression analysis of nonlinear Arrhenius plots: an empirical model and a computer program.

Authors:  R G Duggleby
Journal:  Comput Biol Med       Date:  1984       Impact factor: 4.589

6.  Half-time analysis of the integrated Michaelis equation. Simulation and use of the half-time plot and its direct linear variant in the analysis of some alpha-chymotrypsin, papain- and fumarase-catalysed reactions.

Authors:  C W Wharton; R J Szawelski
Journal:  Biochem J       Date:  1982-05-01       Impact factor: 3.857

7.  The use of steady-state rate equations to analyse progress curve data.

Authors:  R G Duggleby; J F Morrison
Journal:  Biochim Biophys Acta       Date:  1979-06-06

8.  Initial rates. A new plot.

Authors:  E A Boeker
Journal:  Biochem J       Date:  1982-04-01       Impact factor: 3.857

  8 in total
  11 in total

1.  Progress-curve equations for reversible enzyme-catalysed reactions inhibited by tight-binding inhibitors.

Authors:  S E Szedlacsek; V Ostafe; R G Duggleby; M Serban; M O Vlad
Journal:  Biochem J       Date:  1990-02-01       Impact factor: 3.857

2.  High-performance liquid chromatography-based method to evaluate kinetics of glucosinolate hydrolysis by Sinapis alba myrosinase.

Authors:  Kayla J Vastenhout; Ruthellen H Tornberg; Amanda L Johnson; Michael W Amolins; Jared R Mays
Journal:  Anal Biochem       Date:  2014-07-25       Impact factor: 3.365

3.  The kinetics of acylation and deacylation of penicillin acylase from Escherichia coli ATCC 11105: evidence for lowered pKa values of groups near the catalytic centre.

Authors:  M Morillas; M L Goble; R Virden
Journal:  Biochem J       Date:  1999-02-15       Impact factor: 3.857

4.  Analysis of progress curves for enzyme-catalysed reactions. Automatic construction of computer programs for fitting integrated rate equations.

Authors:  R G Duggleby; C Wood
Journal:  Biochem J       Date:  1989-03-01       Impact factor: 3.857

5.  The determination of specificity constants in enzyme-catalysed reactions.

Authors:  I E Crompton; S G Waley
Journal:  Biochem J       Date:  1986-10-01       Impact factor: 3.857

6.  Resistance to inactivation by EGTA of the enzyme-substrate and enzyme-phosphate complexes of alkaline phosphatase.

Authors:  S J Pike; R G Duggleby
Journal:  Biochem J       Date:  1987-06-15       Impact factor: 3.857

7.  Effects of high pressure on solvent isotope effects of yeast alcohol dehydrogenase.

Authors:  D B Northrop; Y K Cho
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

8.  Beta-lactamase inhibitors. The inhibition of serine beta-lactamases by specific boronic acids.

Authors:  I E Crompton; B K Cuthbert; G Lowe; S G Waley
Journal:  Biochem J       Date:  1988-04-15       Impact factor: 3.857

9.  Integration of kinetic analysis of reaction curve with a proper classical approach for enzymatic analysis.

Authors:  Xiaolan Yang; Gaobo Long; Hairong Jiang; Pu Liao; Fei Liao
Journal:  ScientificWorldJournal       Date:  2012-05-03

10.  ICEKAT: an interactive online tool for calculating initial rates from continuous enzyme kinetic traces.

Authors:  Michael D Olp; Kelsey S Kalous; Brian C Smith
Journal:  BMC Bioinformatics       Date:  2020-05-14       Impact factor: 3.169

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