Literature DB >> 3956446

The superstructure of chromatin and its condensation mechanism. II. Theoretical analysis of the X-ray scattering patterns and model calculations.

J Bordas, L Perez-Grau, M H Koch, M C Vega, C Nave.   

Abstract

Model calculations on the superstructure of uncondensed and condensed chromatin are presented. It is found that agreement between the calculated X-ray solution scattering patterns and the experimental observations can be reached with the assumptions that: a) The uncondensed chromatin fibre in solution has a helix-like structure, with a pitch of ca. 33.0 nm, a helical diameter of ca. 20.0 nm and 2.75-3.25 nucleosomes per turn. b) The most condensed state of the chromatin fibre in solution is best represented by a helix-like structure with ca. 2.56 nucleosomes per turn, a pitch of ca. 3.0 nm and a helical diameter of ca. 27.0 nm.

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Year:  1986        PMID: 3956446     DOI: 10.1007/bf00542561

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  14 in total

1.  Solenoidal model for superstructure in chromatin.

Authors:  J T Finch; A Klug
Journal:  Proc Natl Acad Sci U S A       Date:  1976-06       Impact factor: 11.205

2.  The chromosome fiber: evidence for an ordered superstructure of nucleosomes.

Authors:  J Hozier; M Renz; P Nehls
Journal:  Chromosoma       Date:  1977-07-18       Impact factor: 4.316

3.  Involvement of histone H1 in the organization of the chromosome fiber.

Authors:  M Renz; P Nehls; J Hozier
Journal:  Proc Natl Acad Sci U S A       Date:  1977-05       Impact factor: 11.205

4.  Small angle neutron scattering studies of chromatin subunits in solution.

Authors:  R P Hjelm; G G Kneale; P Sauau; J P Baldwin; E M Bradbury; K Ibel
Journal:  Cell       Date:  1977-01       Impact factor: 41.582

5.  Orientation of nucleosomes and linker DNA in calf thymus chromatin determined by photochemical dichroism.

Authors:  S Mitra; D Sen; D M Crothers
Journal:  Nature       Date:  1984 Mar 15-21       Impact factor: 49.962

6.  A high-resolution electron microscopy study of nucleosomes from simian virus 40 chromatin.

Authors:  G Moyne; R Freeman; S Saragosti; M Yaniv
Journal:  J Mol Biol       Date:  1981-07-15       Impact factor: 5.469

7.  Structure of the nucleosome core particle at 7 A resolution.

Authors:  T J Richmond; J T Finch; B Rushton; D Rhodes; A Klug
Journal:  Nature       Date:  1984 Oct 11-17       Impact factor: 49.962

8.  X-ray diffraction study of a new crystal form of the nucleosome core showing higher resolution.

Authors:  J T Finch; R S Brown; T Richmond; B Rushton; L C Lutter; A Klug
Journal:  J Mol Biol       Date:  1981-02-05       Impact factor: 5.469

9.  Neutron diffraction studies on crystals of nucleosome cores using contrast variation.

Authors:  G A Bentley; J T Finch; A Lewit-Bentley
Journal:  J Mol Biol       Date:  1981-02-05       Impact factor: 5.469

10.  Changes in chromatin folding in solution.

Authors:  P J Butler; J O Thomas
Journal:  J Mol Biol       Date:  1980-07-15       Impact factor: 5.469

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  27 in total

1.  DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure.

Authors:  D Z Staynov
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

2.  Electrostatic mechanism of nucleosomal array folding revealed by computer simulation.

Authors:  Jian Sun; Qing Zhang; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-26       Impact factor: 11.205

3.  Highly compact folding of chromatin induced by cellular cation concentrations. Evidence from atomic force microscopy studies in aqueous solution.

Authors:  Silvia Caño; Juan Manuel Caravaca; Marc Martín; Joan-Ramon Daban
Journal:  Eur Biophys J       Date:  2006-03-30       Impact factor: 1.733

4.  Topological constraints on the possible structures of the 30 nm chromatin fibre.

Authors:  D Z Staynov; Y G Proykova
Journal:  Chromosoma       Date:  2007-10-13       Impact factor: 4.316

5.  Orienting rigid and flexible biological assemblies in ferrofluids for small-angle neutron scattering studies.

Authors:  T Sosnick; S Charles; G Stubbs; P Yau; E M Bradbury; P Timmins; J Trewhella
Journal:  Biophys J       Date:  1991-11       Impact factor: 4.033

6.  Dense chromatin plates in metaphase chromosomes.

Authors:  Isaac Gállego; Pablo Castro-Hartmann; Juan Manuel Caravaca; Silvia Caño; Joan-Ramon Daban
Journal:  Eur Biophys J       Date:  2009-02-03       Impact factor: 1.733

Review 7.  What determines the folding of the chromatin fiber?

Authors:  K van Holde; J Zlatanova
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

8.  Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin.

Authors:  J Bednar; R A Horowitz; S A Grigoryev; L M Carruthers; J C Hansen; A J Koster; C L Woodcock
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-24       Impact factor: 11.205

9.  X-ray small angle scattering study of chromatin as a function of fiber length.

Authors:  E Maccioni; L Vergani; A Dembo; G Mascetti; C Nicolini
Journal:  Mol Biol Rep       Date:  1998-03       Impact factor: 2.316

10.  A topological approach to nucleosome structure and dynamics: the linking number paradox and other issues.

Authors:  A Prunell
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

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