Literature DB >> 3934392

Rodent type 2 Alu family, rat identifier sequence, rabbit C family, and bovine or goat 73-bp repeat may have evolved from tRNA genes.

K Sakamoto, N Okada.   

Abstract

Close structural resemblances between several mammalian highly or moderately repetitive families and some specific tRNAs were detected. The rodent type 2 Alu family, rat identifier (ID) sequences, rabbit C family, and bovine or goat 73-bp repeat are most homologous with lysine tRNA5, phenylalanine tRNA, glycine tRNA, and glycine tRNA, respectively. The homologies extend to secondary structures, and the homologous nucleotides are located on nearly the same secondary structures. The repetitive families mentioned have a common structural organization, with a tRNA-like sequence devoid of an aminoacyl stem region. These features suggest that these repetitive families may be generated by nonhomologous recombination between a tRNA gene and a tRNA-unrelated block.

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Year:  1985        PMID： 3934392     DOI： 10.1007/bf02101691

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  25 in total

1.  RNA polymerase III transcriptional units are interspersed among human non-alpha-globin genes.

Authors:  C Duncan; P A Biro; P V Choudary; J T Elder; R R Wang; B G Forget; J K de Riel; S M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

2.  The rabbit C family of short, interspersed repeats. Nucleotide sequence determination and transcriptional analysis.

Authors:  J F Cheng; R Printz; T Callaghan; D Shuey; R C Hardison
Journal:  J Mol Biol       Date:  1984-06-15       Impact factor: 5.469

3.  The 6S RNA transcribed from rodent total DNA in vitro is the transcript of the type 2 Alu family.

Authors:  K Sakamoto; R Kominami; Y Mishima; N Okada
Journal:  Mol Gen Genet       Date:  1984

4.  Identifier sequences are transcribed specifically in brain.

Authors:  J G Sutcliffe; R J Milner; J M Gottesfeld; R A Lerner
Journal:  Nature       Date:  1984 Mar 15-21       Impact factor: 49.962

5.  Structure and evolution of goat gamma-, beta C- and beta A-globin genes: three developmentally regulated genes contain inserted elements.

Authors:  E A Schon; M L Cleary; J R Haynes; J B Lingrel
Journal:  Cell       Date:  1981-12       Impact factor: 41.582

6.  DNA sequence of the rat growth hormone gene: location of the 5' terminus of the growth hormone mRNA and identification of an internal transposon-like element.

Authors:  G S Page; S Smith; H M Goodman
Journal:  Nucleic Acids Res       Date:  1981-05-11       Impact factor: 16.971

7.  Transcription in vivo of an Alu family member upstream from the human epsilon-globin gene.

Authors:  M Allan; J Paul
Journal:  Nucleic Acids Res       Date:  1984-01-25       Impact factor: 16.971

8.  Low molecular weight RNAs transcribed in vitro by RNA polymerase III from Alu-type dispersed repeats in Chinese hamster DNA are also found in vivo.

Authors:  S R Haynes; W R Jelinek
Journal:  Proc Natl Acad Sci U S A       Date:  1981-10       Impact factor: 11.205

9.  A modified nucleotide in tRNA as a possible regulator of aerobiosis: synthesis of cis-2-methyl-thioribosylzeatin in the tRNA of Salmonella.

Authors:  M Buck; B N Ames
Journal:  Cell       Date:  1984-02       Impact factor: 41.582

10.  Nucleotide sequence of genes coding for tRNAPhe and tRNATyr from a repeating unit of X. laevis DNA.

Authors:  F Müller; S G Clarkson
Journal:  Cell       Date:  1980-02       Impact factor: 41.582
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  35 in total

1.  Transfer RNA-like structure of the human Alu family: implications of its generation mechanism and possible functions.

Authors:  N Okada
Journal:  J Mol Evol       Date:  1990-12       Impact factor: 2.395

2.  Revised genomic consensus for the hypermethylated CpG island region of the human L1 transposon and integration sites of full length L1 elements from recombinant clones made using methylation-tolerant host strains.

Authors:  P J Crowther; J P Doherty; M E Linsenmeyer; M R Williamson; D M Woodcock
Journal:  Nucleic Acids Res       Date:  1991-05-11       Impact factor: 16.971

3.  Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution.

Authors:  Y Kido; M Aono; T Yamaki; K Matsumoto; S Murata; M Saneyoshi; N Okada
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

4.  Neural BC1 RNA: cDNA clones reveal nonrepetitive sequence content.

Authors:  T M DeChiara; J Brosius
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

5.  Expression of small cytoplasmic transcripts of the rat identifier element in vivo and in cultured cells.

Authors:  R D McKinnon; P Danielson; M A Brow; F E Bloom; J G Sutcliffe
Journal:  Mol Cell Biol       Date:  1987-06       Impact factor: 4.272

6.  Details of retropositional genome dynamics that provide a rationale for a generic division: the distinct branching of all the pacific salmon and trout (Oncorhynchus) from the Atlantic salmon and trout (Salmo).

Authors:  S Murata; N Takasaki; M Saitoh; H Tachida; N Okada
Journal:  Genetics       Date:  1996-03       Impact factor: 4.562

7.  The 3' ends of tRNA-derived SINEs originated from the 3' ends of LINEs: a new example from the bovine genome.

Authors:  N Okada; M Hamada
Journal:  J Mol Evol       Date:  1997       Impact factor: 2.395

8.  DNA sequence of a class I pseudogene from the Tla region of the murine MHC: recombination at a B2 alu repetitive sequence.

Authors:  D A Fisher; M Pecht; L Hood
Journal:  J Mol Evol       Date:  1989-04       Impact factor: 2.395

9.  tRNA derived insertion element in histone gene repeating unit of Drosophila melanogaster.

Authors:  Y Matsuo; T Yamazaki
Journal:  Nucleic Acids Res       Date:  1989-01-11       Impact factor: 16.971

10.  Pseudouridine and ribothymidine formation in the tRNA-like domain of turnip yellow mosaic virus RNA.

Authors:  H F Becker; Y Motorin; C Florentz; R Giegé; H Grosjean
Journal:  Nucleic Acids Res       Date:  1998-09-01       Impact factor: 16.971
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