Literature DB >> 3929250

Comparative statistics for DNA and protein sequences: multiple sequence analysis.

S Karlin, G Ghandour.   

Abstract

Concepts and methods [Karlin, S. & Ghandour, G. (1985) Proc. Natl. Acad. Sci. USA 82, 5800-5804] for the analysis of patterns and relationships are extended to multiple DNA and protein sequences. Functionals include multiple sequence common word occurrence distributions, characterizations of high frequency shared words, and ascertainment of long block identities. Various comparisons of sequences using natural alphabets obtained from grouping nucleotides or amino acids by their chemical and functional characteristics are described. Specific applications are given to globin genes, mitochondrial genomes, and a variety of mammalian viruses.

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Year:  1985        PMID： 3929250      PMCID： PMC391017          DOI： 10.1073/pnas.82.18.6186

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  13 in total

1.  Comparative statistics for DNA and protein sequences: single sequence analysis.

Authors:  S Karlin; G Ghandour
Journal:  Proc Natl Acad Sci U S A       Date:  1985-09       Impact factor: 11.205

2.  Two types of amino acid substitutions in protein evolution.

Authors:  T Miyata; S Miyazawa; T Yasunaga
Journal:  J Mol Evol       Date:  1979-03-15       Impact factor: 2.395

3.  Repeating sequences and gene duplication in proteins.

Authors:  A D McLachlan
Journal:  J Mol Biol       Date:  1972-03-14       Impact factor: 5.469

4.  Alignment maps and homology analysis of the J-C intron in human, mouse, and rabbit immunoglobulin kappa gene.

Authors:  S Karlin; G Ghandour
Journal:  Mol Biol Evol       Date:  1985-01       Impact factor: 16.240

5.  Comparative analysis of human and bovine papillomaviruses.

Authors:  S Karlin; G Ghandour; D E Foulser; L J Korn
Journal:  Mol Biol Evol       Date:  1984-07       Impact factor: 16.240

6.  Cloned human and mouse kappa immunoglobulin constant and J region genes conserve homology in functional segments.

Authors:  P A Hieter; E E Max; J G Seidman; J V Maizel; P Leder
Journal:  Cell       Date:  1980-11       Impact factor: 41.582

7.  An immunoglobulin heavy chain variable region gene is generated from three segments of DNA: VH, D and JH.

Authors:  P Early; H Huang; M Davis; K Calame; L Hood
Journal:  Cell       Date:  1980-04       Impact factor: 41.582

8.  The structure and evolution of the human beta-globin gene family.

Authors:  A Efstratiadis; J W Posakony; T Maniatis; R M Lawn; C O'Connell; R A Spritz; J K DeRiel; B G Forget; S M Weissman; J L Slightom; A E Blechl; O Smithies; F E Baralle; C C Shoulders; N J Proudfoot
Journal:  Cell       Date:  1980-10       Impact factor: 41.582

9.  An evaluation of the relatedness of proteins based on comparison of amino acid sequences.

Authors:  J E Haber; D E Koshland
Journal:  J Mol Biol       Date:  1970-06-28       Impact factor: 5.469

10.  Rabbit globin pseudogene psi beta 2 is a hybrid of delta- and beta-globin gene sequences.

Authors:  R C Hardison; J B Margot
Journal:  Mol Biol Evol       Date:  1984-07       Impact factor: 16.240
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  4 in total

1.  Multiple-alphabet amino acid sequence comparisons of the immunoglobulin kappa-chain constant domain.

Authors:  S Karlin; G Ghandour
Journal:  Proc Natl Acad Sci U S A       Date:  1985-12       Impact factor: 11.205

Review 2.  Molecular immunity to mycobacteria: knowledge from the mutation and phenotype spectrum analysis of Mendelian susceptibility to mycobacterial diseases.

Authors:  Hui-Qi Qu; Susan P Fisher-Hoch; Joseph B McCormick
Journal:  Int J Infect Dis       Date:  2011-02-16       Impact factor: 3.623

3.  CLUSS: clustering of protein sequences based on a new similarity measure.

Authors:  Abdellali Kelil; Shengrui Wang; Ryszard Brzezinski; Alain Fleury
Journal:  BMC Bioinformatics       Date:  2007-08-04       Impact factor: 3.169

4.  Support vector machine (SVM) based multiclass prediction with basic statistical analysis of plasminogen activators.

Authors:  Selvaraj Muthukrishnan; Munish Puri; Christophe Lefevre
Journal:  BMC Res Notes       Date:  2014-01-27
  4 in total

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